Gene annotation
Transcriptome id Sobic.002G293700.4,Sobic.002G293700.2,Sobic.002G293700.3,Sobic.002G293700.1
Synonym ATX2, Sb02g032470, SDG30
Functional annotation ATXR, putative, expressed
UniProt A0A1B6QE33 , A0A1B6QE15 , A0A1W0W687 , A0A1B6QE18
Pfam PF13831 PF13832 PF00856 PF13831 PF00856 PF13832
Panther DB PTHR22884 PTHR22884:SF351
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G05830 : trithorax-like protein 2
RAP-DB (Rice) LOC_Os09g38440.1 : ATXR, putative, expressed
MaizeGDB (Corn) Zm00025a014541 , Zm00025a018503
Brachypodium PNT65122 , KQJ91430
Barley HORVU5Hr1G088420.19 , HORVU5Hr1G088420.18 , HORVU5Hr1G088420.11 , HORVU5Hr1G088420.10 , HORVU5Hr1G088420.13 , HORVU5Hr1G088420.12 , HORVU5Hr1G088420.15 , HORVU5Hr1G088420.14 , HORVU5Hr1G088420.17 , HORVU5Hr1G088420.16 , HORVU5Hr1G088420.5 , HORVU5Hr1G088420.4 , HORVU5Hr1G088420.7 , HORVU5Hr1G088420.6 , HORVU5Hr1G088420.1 , HORVU5Hr1G088420.3 , HORVU5Hr1G088420.2 , HORVU5Hr1G088420.9 , HORVU5Hr1G088420.24 , HORVU5Hr1G088420.25 , HORVU5Hr1G088420.26 , HORVU5Hr1G088420.27 , HORVU5Hr1G088420.20 , HORVU5Hr1G088420.21 , HORVU5Hr1G088420.22 , HORVU5Hr1G088420.23 , HORVU5Hr1G088420.28
Wheat TraesCS5D02G366700 , TraesCS5D02G366700 , TraesCS5A02G357600 , TraesCS5B02G360200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
2 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
4 Sobic.006G241800 receptor kinase, putative, expressed -
5 Sobic.002G071850 - -
6 Sobic.001G285200 protein transport protein-related, putative, expressed -
7 Sobic.002G370400 expressed protein -
8 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
9 Sobic.003G031700 protein kinase family protein, putative, expressed -
10 Sobic.001G008300 expressed protein -
11 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
12 Sobic.002G074000 expressed protein -
13 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
14 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
15 Sobic.001G079900 expressed protein -
16 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
17 Sobic.010G024500 expressed protein -
18 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
20 Sobic.002G319300 IQ calmodulin-binding motif family protein, expressed K16743: ASPM, abnormal spindle-like microcephaly-associated protein


Gene co-expression network
sample Sobic002G293700 Sobic002G293700 Sobic006G272500 Sobic006G272500 Sobic002G293700--Sobic006G272500 Sobic009G124800 Sobic009G124800 Sobic002G293700--Sobic009G124800 Sobic006G257200 Sobic006G257200 Sobic002G293700--Sobic006G257200 Sobic006G241800 Sobic006G241800 Sobic002G293700--Sobic006G241800 Sobic002G071850 Sobic002G071850 Sobic002G293700--Sobic002G071850 Sobic001G285200 Sobic001G285200 Sobic002G293700--Sobic001G285200 Sobic002G370400 Sobic002G370400 Sobic002G293700--Sobic002G370400 Sobic008G169400 Sobic008G169400 Sobic002G293700--Sobic008G169400 Sobic003G031700 Sobic003G031700 Sobic002G293700--Sobic003G031700 Sobic006G272500--Sobic009G124800 Sobic006G272500--Sobic001G285200 Sobic006G272500--Sobic002G293700 Sobic010G010900 Sobic010G010900 Sobic006G272500--Sobic010G010900 Sobic002G419200 Sobic002G419200 Sobic006G272500--Sobic002G419200 Sobic001G296100 Sobic001G296100 Sobic006G272500--Sobic001G296100 Sobic007G160300 Sobic007G160300 Sobic006G272500--Sobic007G160300 Sobic006G272500--Sobic002G370400 Sobic008G148500 Sobic008G148500 Sobic006G272500--Sobic008G148500 Sobic009G124800--Sobic006G272500 Sobic009G124800--Sobic002G293700 Sobic001G074100 Sobic001G074100 Sobic009G124800--Sobic001G074100 Sobic009G124800--Sobic001G296100 Sobic001G381100 Sobic001G381100 Sobic009G124800--Sobic001G381100 Sobic009G124800--Sobic006G241800 Sobic010G211800 Sobic010G211800 Sobic009G124800--Sobic010G211800 Sobic009G124800--Sobic002G370400 Sobic004G115700 Sobic004G115700 Sobic009G124800--Sobic004G115700 Sobic002G142500 Sobic002G142500 Sobic006G257200--Sobic002G142500 Sobic006G257200--Sobic006G241800 Sobic002G362700 Sobic002G362700 Sobic006G257200--Sobic002G362700 Sobic006G257200--Sobic002G293700 Sobic003G078300 Sobic003G078300 Sobic006G257200--Sobic003G078300 Sobic001G425700 Sobic001G425700 Sobic006G257200--Sobic001G425700 Sobic002G001100 Sobic002G001100 Sobic006G257200--Sobic002G001100 Sobic004G164700 Sobic004G164700 Sobic006G257200--Sobic004G164700 Sobic010G135300 Sobic010G135300 Sobic006G257200--Sobic010G135300 Sobic003G291000 Sobic003G291000 Sobic006G241800--Sobic003G291000 Sobic003G018700 Sobic003G018700 Sobic006G241800--Sobic003G018700 Sobic004G317200 Sobic004G317200 Sobic006G241800--Sobic004G317200 Sobic006G241800--Sobic004G164700 Sobic010G024500 Sobic010G024500 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic010G020600 Sobic010G020600 Sobic006G241800--Sobic010G020600 Sobic006G241800--Sobic001G381100 Sobic006G241800--Sobic001G074100 Sobic008G097700 Sobic008G097700 Sobic002G071850--Sobic008G097700 Sobic003G070600 Sobic003G070600 Sobic002G071850--Sobic003G070600 Sobic002G071850--Sobic007G160300 Sobic002G071850--Sobic010G020600 Sobic004G248100 Sobic004G248100 Sobic002G071850--Sobic004G248100 Sobic007G163400 Sobic007G163400 Sobic002G071850--Sobic007G163400 Sobic002G071850--Sobic002G293700 Sobic003G089300 Sobic003G089300 Sobic002G071850--Sobic003G089300 Sobic003G339600 Sobic003G339600 Sobic002G071850--Sobic003G339600 Sobic001G285200--Sobic002G419200 Sobic001G201000 Sobic001G201000 Sobic001G285200--Sobic001G201000 Sobic001G285200--Sobic006G272500 Sobic005G055600 Sobic005G055600 Sobic001G285200--Sobic005G055600 Sobic003G277200 Sobic003G277200 Sobic001G285200--Sobic003G277200 Sobic008G192700 Sobic008G192700 Sobic001G285200--Sobic008G192700 Sobic003G338200 Sobic003G338200 Sobic001G285200--Sobic003G338200 Sobic001G285200--Sobic010G211800 Sobic009G175100 Sobic009G175100 Sobic001G285200--Sobic009G175100 Sobic001G487200 Sobic001G487200 Sobic002G370400--Sobic001G487200 Sobic001G231200 Sobic001G231200 Sobic002G370400--Sobic001G231200 Sobic004G315700 Sobic004G315700 Sobic002G370400--Sobic004G315700 Sobic002G370400--Sobic006G272500 Sobic009G212100 Sobic009G212100 Sobic002G370400--Sobic009G212100 Sobic001G296800 Sobic001G296800 Sobic002G370400--Sobic001G296800 Sobic002G370400--Sobic009G124800 Sobic003G153900 Sobic003G153900 Sobic002G370400--Sobic003G153900 Sobic002G370400--Sobic010G211800 Sobic001G079900 Sobic001G079900 Sobic008G169400--Sobic001G079900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic003G031700--Sobic002G362700 Sobic002G320600 Sobic002G320600 Sobic003G031700--Sobic002G320600 Sobic006G193100 Sobic006G193100 Sobic003G031700--Sobic006G193100 Sobic003G031700--Sobic001G074100 Sobic009G202801 Sobic009G202801 Sobic003G031700--Sobic009G202801 Sobic001G522300 Sobic001G522300 Sobic003G031700--Sobic001G522300 Sobic001G008300 Sobic001G008300 Sobic003G031700--Sobic001G008300 Sobic003G031700--Sobic010G211800 Sobic007G087800 Sobic007G087800 Sobic003G031700--Sobic007G087800
Octagon: transcription factors


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