Gene annotation
Transcriptome id Sobic.003G153900.1
Synonym Sb03g013430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XJR6
Pfam PF00069
Panther DB PTHR27007 PTHR27007:SF8
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G55830 : Concanavalin A-like lectin protein kinase family protein
RAP-DB (Rice) LOC_Os09g07730.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ86994
Barley HORVU5Hr1G051900.8 , HORVU5Hr1G051900.9 , HORVU5Hr1G051900.4 , HORVU5Hr1G051900.5 , HORVU5Hr1G051900.6 , HORVU5Hr1G051900.7 , HORVU5Hr1G051900.1 , HORVU5Hr1G051900.2 , HORVU5Hr1G051900.3 , HORVU5Hr1G051900.10 , HORVU5Hr1G051900.11
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
2 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
3 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
4 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
5 Sobic.001G079900 expressed protein -
6 Sobic.002G370400 expressed protein -
7 Sobic.001G369800 monocopper oxidase, putative, expressed -
8 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
9 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
10 Sobic.001G212600 a_IG002N01.7, putative, expressed -
11 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
12 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
13 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
14 Sobic.001G290500 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
15 Sobic.006G142500 protein kinase, putative, expressed -
16 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
17 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
18 Sobic.002G293700 ATXR, putative, expressed -
19 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
20 Sobic.008G031200 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G153900 Sobic003G153900 Sobic003G351900 Sobic003G351900 Sobic003G153900--Sobic003G351900 Sobic008G169400 Sobic008G169400 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic001G079900 Sobic001G079900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic006G008300 Sobic006G008300 Sobic003G153900--Sobic006G008300 Sobic006G142500 Sobic006G142500 Sobic003G351900--Sobic006G142500 Sobic003G351900--Sobic001G079900 Sobic002G006100 Sobic002G006100 Sobic003G351900--Sobic002G006100 Sobic002G027600 Sobic002G027600 Sobic003G351900--Sobic002G027600 Sobic003G351900--Sobic003G153900 Sobic001G212600 Sobic001G212600 Sobic003G351900--Sobic001G212600 Sobic005G032600 Sobic005G032600 Sobic003G351900--Sobic005G032600 Sobic004G164700 Sobic004G164700 Sobic003G351900--Sobic004G164700 Sobic001G395200 Sobic001G395200 Sobic003G351900--Sobic001G395200 Sobic008G169400--Sobic001G079900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic007G187700 Sobic007G187700 Sobic002G021200--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic006G281900--Sobic002G168000 Sobic006G281900--Sobic002G021200 Sobic009G188900 Sobic009G188900 Sobic006G281900--Sobic009G188900 Sobic001G290500 Sobic001G290500 Sobic006G281900--Sobic001G290500 Sobic001G199500 Sobic001G199500 Sobic006G281900--Sobic001G199500 Sobic001G425700 Sobic001G425700 Sobic006G281900--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic006G281900--Sobic009G225500 Sobic006G281900--Sobic007G187700 Sobic003G024000 Sobic003G024000 Sobic006G281900--Sobic003G024000 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic001G079900--Sobic002G027600 Sobic001G079900--Sobic009G141700 Sobic001G487200 Sobic001G487200 Sobic002G370400--Sobic001G487200 Sobic001G231200 Sobic001G231200 Sobic002G370400--Sobic001G231200 Sobic004G315700 Sobic004G315700 Sobic002G370400--Sobic004G315700 Sobic006G272500 Sobic006G272500 Sobic002G370400--Sobic006G272500 Sobic002G370400--Sobic009G212100 Sobic001G296800 Sobic001G296800 Sobic002G370400--Sobic001G296800 Sobic009G124800 Sobic009G124800 Sobic002G370400--Sobic009G124800 Sobic002G370400--Sobic003G153900 Sobic010G211800 Sobic010G211800 Sobic002G370400--Sobic010G211800 Sobic002G284100 Sobic002G284100 Sobic001G369800--Sobic002G284100 Sobic001G369800--Sobic001G487200 Sobic001G123100 Sobic001G123100 Sobic001G369800--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic001G369800--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic001G369800--Sobic006G218900 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic001G369800--Sobic003G351900 Sobic001G369800--Sobic001G212600 Sobic009G212100--Sobic001G487200 Sobic009G212100--Sobic004G315700 Sobic009G212100--Sobic001G296800 Sobic003G226700 Sobic003G226700 Sobic009G212100--Sobic003G226700 Sobic007G084200 Sobic007G084200 Sobic009G212100--Sobic007G084200 Sobic006G267500 Sobic006G267500 Sobic009G212100--Sobic006G267500 Sobic006G084300 Sobic006G084300 Sobic009G212100--Sobic006G084300 Sobic009G212100--Sobic001G369800 Sobic006G254500 Sobic006G254500 Sobic009G212100--Sobic006G254500 Sobic006G008300--Sobic001G395200 Sobic010G143600 Sobic010G143600 Sobic006G008300--Sobic010G143600 Sobic003G104100 Sobic003G104100 Sobic006G008300--Sobic003G104100 Sobic006G008300--Sobic003G153900 Sobic009G216500 Sobic009G216500 Sobic006G008300--Sobic009G216500 Sobic003G411700 Sobic003G411700 Sobic006G008300--Sobic003G411700 Sobic009G105400 Sobic009G105400 Sobic006G008300--Sobic009G105400 Sobic003G129500 Sobic003G129500 Sobic006G008300--Sobic003G129500 Sobic009G207400 Sobic009G207400 Sobic006G008300--Sobic009G207400
Octagon: transcription factors


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