Gene annotation
Transcriptome id Sobic.008G031200.2,Sobic.008G031200.1,Sobic.008G031200.3
Synonym Sb08g002705
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5R4I3 , C5YRK9
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF291
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18840 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os12g02280.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ89451 , KQJ89449 , KQJ89461
Barley HORVU4Hr1G022710.2 , HORVU4Hr1G022710.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
3 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
4 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
5 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
6 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.001G537400 MYB family transcription factor, putative, expressed -
9 Sobic.002G123600 expressed protein -
10 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
12 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.001G242300 expressed protein -
14 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
17 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
18 Sobic.009G063500 OsWAK75 - OsWAK receptor-like protein kinase, expressed -
19 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
20 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic008G031200 Sobic008G031200 Sobic008G179000 Sobic008G179000 Sobic008G031200--Sobic008G179000 Sobic001G268300 Sobic001G268300 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic008G179000--Sobic010G252700 Sobic008G179000--Sobic008G031200 Sobic008G179000--Sobic001G268300 Sobic008G179000--Sobic002G362200 Sobic007G123100 Sobic007G123100 Sobic008G179000--Sobic007G123100 Sobic001G149100 Sobic001G149100 Sobic008G179000--Sobic001G149100 Sobic004G241000 Sobic004G241000 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic010G252700--Sobic008G179000 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic010G252700--Sobic002G362200 Sobic010G252700--Sobic001G149100 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic008G169400 Sobic008G169400 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic001G448100 Sobic001G448100 Sobic003G397100--Sobic001G448100 Sobic003G397100--Sobic008G031200 Sobic003G351900 Sobic003G351900 Sobic003G153900--Sobic003G351900 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic001G079900 Sobic001G079900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic006G008300 Sobic006G008300 Sobic003G153900--Sobic006G008300 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic001G537400--Sobic002G362200 Sobic001G199500 Sobic001G199500 Sobic001G537400--Sobic001G199500 Sobic009G177200 Sobic009G177200 Sobic001G537400--Sobic009G177200 Sobic009G188900 Sobic009G188900 Sobic001G537400--Sobic009G188900 Sobic001G537400--Sobic002G426100 Sobic001G537400--Sobic008G031200 Sobic001G537400--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic001G537400--Sobic007G006800 Sobic001G211500 Sobic001G211500 Sobic001G537400--Sobic001G211500 Sobic006G127200 Sobic006G127200 Sobic002G123600--Sobic006G127200 Sobic008G090400 Sobic008G090400 Sobic002G123600--Sobic008G090400 Sobic004G306100 Sobic004G306100 Sobic002G123600--Sobic004G306100 Sobic002G095300 Sobic002G095300 Sobic002G123600--Sobic002G095300 Sobic002G271400 Sobic002G271400 Sobic002G123600--Sobic002G271400 Sobic002G123600--Sobic003G397100 Sobic002G123600--Sobic001G242300 Sobic003G411700 Sobic003G411700 Sobic002G123600--Sobic003G411700 Sobic004G129500 Sobic004G129500 Sobic002G123600--Sobic004G129500
Octagon: transcription factors


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