Gene annotation
Transcriptome id Sobic.008G179000.1
Synonym Sb08g022230
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5R8B0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF77
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25970 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os08g28830.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a004768
Brachypodium PNT74784 , PNT74785
Barley -
Wheat TraesCSU02G111700 , TraesCSU02G111700 , TraesCS6B02G069600 , TraesCSU02G111200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
2 Sobic.008G031200 pentatricopeptide, putative, expressed -
3 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
4 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
5 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G149100 vegetative storage protein, putative, expressed -
7 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.008G009000 pentatricopeptide, putative, expressed -
10 Sobic.001G537400 MYB family transcription factor, putative, expressed -
11 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
14 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
15 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
16 Sobic.006G069100 pentatricopeptide, putative, expressed -
17 Sobic.003G142400 pentatricopeptide, putative, expressed -
18 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD


Gene co-expression network
sample Sobic008G179000 Sobic008G179000 Sobic010G252700 Sobic010G252700 Sobic008G179000--Sobic010G252700 Sobic008G031200 Sobic008G031200 Sobic008G179000--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic008G179000--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic008G179000--Sobic002G362200 Sobic007G123100 Sobic007G123100 Sobic008G179000--Sobic007G123100 Sobic001G149100 Sobic001G149100 Sobic008G179000--Sobic001G149100 Sobic004G241000 Sobic004G241000 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic010G252700--Sobic008G179000 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic010G252700--Sobic002G362200 Sobic010G252700--Sobic001G149100 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic007G123100--Sobic010G252700 Sobic007G123100--Sobic008G179000 Sobic007G123100--Sobic001G149100 Sobic007G123100--Sobic008G031200 Sobic006G069100 Sobic006G069100 Sobic007G123100--Sobic006G069100 Sobic007G123100--Sobic002G362200 Sobic005G088900 Sobic005G088900 Sobic007G123100--Sobic005G088900 Sobic007G123100--Sobic006G071628 Sobic007G123100--Sobic001G268300 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic010G190900 Sobic010G190900 Sobic004G241000--Sobic010G190900 Sobic010G068900 Sobic010G068900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic006G085900 Sobic006G085900 Sobic004G241000--Sobic006G085900 Sobic002G172500 Sobic002G172500 Sobic004G241000--Sobic002G172500 Sobic009G155400 Sobic009G155400 Sobic004G241000--Sobic009G155400 Sobic003G184300 Sobic003G184300 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic008G009000--Sobic008G179000 Sobic008G009000--Sobic003G239000 Sobic008G009000--Sobic001G149100 Sobic008G009000--Sobic008G163400 Sobic008G009000--Sobic002G267600 Sobic008G009000--Sobic004G241000 Sobic008G009000--Sobic004G256900 Sobic008G009000--Sobic010G252700 Sobic008G009000--Sobic003G142400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.