Gene annotation
Transcriptome id Sobic.001G122200.3,Sobic.001G122200.1,Sobic.001G122200.2
Synonym Sb01g010740, SDG37
Functional annotation zinc finger protein, putative, expressed
UniProt C5WNS1 , A0A1Z5S5D2 , A0A1Z5S5D1
Pfam PF01753 PF00856 PF01753
Panther DB PTHR12197 PTHR12197:SF165
NCBI CDD KOG2084; Predicted histone tail methylase containing SET domain
KEGG Orthology K11426; [histone H3]-lysine4/36 N-trimethyltransferase SMYD
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G17900 : SET domain group 37
RAP-DB (Rice) LOC_Os03g49730.2 : zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a004735 , Zm00025a017042
Brachypodium KQK13569
Barley HORVU4Hr1G006720.18 , HORVU4Hr1G006720.17 , HORVU4Hr1G006720.11 , HORVU4Hr1G006720.13 , HORVU4Hr1G006720.12 , HORVU4Hr1G006720.9 , HORVU4Hr1G006720.8 , HORVU4Hr1G006720.1 , HORVU4Hr1G006720.3 , HORVU4Hr1G006720.2 , HORVU4Hr1G006720.5 , HORVU4Hr1G006720.4 , HORVU4Hr1G006720.7 , HORVU4Hr1G006720.6 , HORVU4Hr1G006720.22 , HORVU4Hr1G006720.21
Wheat TraesCS4D02G039300 , TraesCS4D02G039300 , TraesCS4B02G042100 , TraesCS4A02G271900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
3 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
4 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
7 Sobic.001G396800 peptide chain release factor protein, putative, expressed K02836: peptide chain release factor 2
8 Sobic.006G069100 pentatricopeptide, putative, expressed -
9 Sobic.001G149100 vegetative storage protein, putative, expressed -
10 Sobic.010G123700 expressed protein -
11 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
12 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.003G142400 pentatricopeptide, putative, expressed -
16 Sobic.006G085900 pentatricopeptide, putative, expressed -
17 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
18 Sobic.010G190900 pentatricopeptide, putative, expressed -
19 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
20 Sobic.002G183300 GTP binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G122200 Sobic001G122200 Sobic008G163400 Sobic008G163400 Sobic001G122200--Sobic008G163400 Sobic010G068900 Sobic010G068900 Sobic001G122200--Sobic010G068900 Sobic004G282500 Sobic004G282500 Sobic001G122200--Sobic004G282500 Sobic004G241000 Sobic004G241000 Sobic001G122200--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic001G122200--Sobic006G262800 Sobic001G268300 Sobic001G268300 Sobic001G122200--Sobic001G268300 Sobic001G396800 Sobic001G396800 Sobic001G122200--Sobic001G396800 Sobic006G069100 Sobic006G069100 Sobic001G122200--Sobic006G069100 Sobic001G149100 Sobic001G149100 Sobic001G122200--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic009G155400 Sobic009G155400 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic004G256900 Sobic004G256900 Sobic008G163400--Sobic004G256900 Sobic008G163400--Sobic006G262800 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic008G163400--Sobic001G149100 Sobic002G172500 Sobic002G172500 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic010G068900--Sobic010G190900 Sobic010G068900--Sobic004G241000 Sobic010G068900--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic010G068900--Sobic006G085900 Sobic003G184300 Sobic003G184300 Sobic010G068900--Sobic003G184300 Sobic001G478900 Sobic001G478900 Sobic010G068900--Sobic001G478900 Sobic004G282500--Sobic001G268300 Sobic004G282500--Sobic006G262800 Sobic003G325900 Sobic003G325900 Sobic004G282500--Sobic003G325900 Sobic005G078700 Sobic005G078700 Sobic004G282500--Sobic005G078700 Sobic004G282500--Sobic001G122200 Sobic009G154900 Sobic009G154900 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic008G031200 Sobic008G031200 Sobic004G282500--Sobic008G031200 Sobic003G412000 Sobic003G412000 Sobic004G282500--Sobic003G412000 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic006G262800--Sobic010G068900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic006G262800--Sobic002G172500 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic006G262800--Sobic001G268300 Sobic006G262800--Sobic004G241000 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic001G268300--Sobic004G282500 Sobic001G268300--Sobic005G078700 Sobic003G214300 Sobic003G214300 Sobic001G396800--Sobic003G214300 Sobic001G396800--Sobic001G122200 Sobic006G056600 Sobic006G056600 Sobic001G396800--Sobic006G056600 Sobic010G247400 Sobic010G247400 Sobic001G396800--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic001G396800--Sobic009G193850 Sobic003G407600 Sobic003G407600 Sobic001G396800--Sobic003G407600 Sobic008G098600 Sobic008G098600 Sobic001G396800--Sobic008G098600 Sobic001G041200 Sobic001G041200 Sobic001G396800--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic001G396800--Sobic004G011000 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic001G149100--Sobic008G163400 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic001G149100--Sobic002G267600
Octagon: transcription factors


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