Gene annotation
Transcriptome id Sobic.001G396800.1,Sobic.001G396800.2
Synonym Sb01g037550
Functional annotation peptide chain release factor protein, putative, expressed
UniProt A0A1Z5S9W8 , C5WMH9
Pfam PF00472 PF03462
Panther DB PTHR11075 PTHR11075:SF6
NCBI CDD KOG2726; Mitochondrial polypeptide chain release factor
KEGG Orthology K02836; peptide chain release factor 2
Gene Ontology GO:0006415; translational termination GO:0003747translation release factor activity GO:0016149translation release factor activity, codon specific GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT1G56350 : Peptide chain release factor 2
RAP-DB (Rice) LOC_Os03g19300.1 : peptide chain release factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a022401
Brachypodium KQK22018
Barley HORVU4Hr1G054130.2 , HORVU4Hr1G054130.1 , HORVU4Hr1G054130.7 , HORVU4Hr1G054130.6 , HORVU4Hr1G054130.5 , HORVU4Hr1G054130.4 , HORVU4Hr1G054130.9 , HORVU4Hr1G054130.10
Wheat TraesCS4B02G184700 , TraesCS4B02G184700 , TraesCS4A02G120000 , TraesCS4A02G120000 , TraesCS4D02G186000
Populus PNT06040


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cDNA sequences
Sobic.001G396800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G214300 expressed protein -
2 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
3 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
4 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
5 Sobic.009G193850 - -
6 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
7 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
8 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
9 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
10 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
11 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
12 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
13 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
14 Sobic.004G072800 expressed protein -
15 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
16 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
17 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
18 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
19 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
20 Sobic.007G162800 expressed protein -


Gene co-expression network
sample Sobic001G396800 Sobic001G396800 Sobic003G214300 Sobic003G214300 Sobic001G396800--Sobic003G214300 Sobic001G122200 Sobic001G122200 Sobic001G396800--Sobic001G122200 Sobic006G056600 Sobic006G056600 Sobic001G396800--Sobic006G056600 Sobic010G247400 Sobic010G247400 Sobic001G396800--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic001G396800--Sobic009G193850 Sobic003G407600 Sobic003G407600 Sobic001G396800--Sobic003G407600 Sobic008G098600 Sobic008G098600 Sobic001G396800--Sobic008G098600 Sobic001G041200 Sobic001G041200 Sobic001G396800--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic001G396800--Sobic004G011000 Sobic006G142400 Sobic006G142400 Sobic003G214300--Sobic006G142400 Sobic003G214300--Sobic008G098600 Sobic001G499000 Sobic001G499000 Sobic003G214300--Sobic001G499000 Sobic004G072800 Sobic004G072800 Sobic003G214300--Sobic004G072800 Sobic010G264000 Sobic010G264000 Sobic003G214300--Sobic010G264000 Sobic009G131900 Sobic009G131900 Sobic003G214300--Sobic009G131900 Sobic003G214300--Sobic010G247400 Sobic001G061200 Sobic001G061200 Sobic003G214300--Sobic001G061200 Sobic007G162800 Sobic007G162800 Sobic003G214300--Sobic007G162800 Sobic008G163400 Sobic008G163400 Sobic001G122200--Sobic008G163400 Sobic010G068900 Sobic010G068900 Sobic001G122200--Sobic010G068900 Sobic004G282500 Sobic004G282500 Sobic001G122200--Sobic004G282500 Sobic004G241000 Sobic004G241000 Sobic001G122200--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic001G122200--Sobic006G262800 Sobic001G268300 Sobic001G268300 Sobic001G122200--Sobic001G268300 Sobic001G122200--Sobic001G396800 Sobic006G069100 Sobic006G069100 Sobic001G122200--Sobic006G069100 Sobic001G149100 Sobic001G149100 Sobic001G122200--Sobic001G149100 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G242300 Sobic006G242300 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic006G056600--Sobic004G072800 Sobic006G056600--Sobic001G041200 Sobic001G091900 Sobic001G091900 Sobic006G056600--Sobic001G091900 Sobic002G341800 Sobic002G341800 Sobic006G056600--Sobic002G341800 Sobic002G014400 Sobic002G014400 Sobic006G056600--Sobic002G014400 Sobic006G056600--Sobic010G247400 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic009G193850--Sobic001G041200 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic009G193850--Sobic007G162800 Sobic002G148300 Sobic002G148300 Sobic009G193850--Sobic002G148300 Sobic001G404200 Sobic001G404200 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic008G080000 Sobic008G080000 Sobic009G193850--Sobic008G080000 Sobic009G193850--Sobic006G242300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic010G007100 Sobic010G007100 Sobic008G098600--Sobic010G007100 Sobic008G098600--Sobic003G214300 Sobic008G098600--Sobic003G382500 Sobic009G046700 Sobic009G046700 Sobic008G098600--Sobic009G046700 Sobic003G006400 Sobic003G006400 Sobic008G098600--Sobic003G006400 Sobic008G098600--Sobic006G142400 Sobic009G251200 Sobic009G251200 Sobic008G098600--Sobic009G251200 Sobic008G098600--Sobic010G264000 Sobic008G098600--Sobic001G322600 Sobic001G041200--Sobic006G242300 Sobic003G119400 Sobic003G119400 Sobic001G041200--Sobic003G119400 Sobic006G257001 Sobic006G257001 Sobic001G041200--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G041200--Sobic006G034800 Sobic001G041200--Sobic001G067900 Sobic002G259400 Sobic002G259400 Sobic001G041200--Sobic002G259400 Sobic001G105100 Sobic001G105100 Sobic001G041200--Sobic001G105100 Sobic001G041200--Sobic006G056600 Sobic001G041200--Sobic009G033900 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic004G011000--Sobic001G370300 Sobic004G011000--Sobic010G247400 Sobic004G011000--Sobic009G193850
Octagon: transcription factors


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