Gene annotation
Transcriptome id Sobic.009G222900.1
Synonym NFD3
Functional annotation ribosomal protein, putative, expressed
UniProt A0A1B6P9V1
Pfam PF00411
Panther DB PTHR11759 PTHR11759:SF8
NCBI CDD -
KEGG Orthology K02948; RP-S11, MRPS11, small subunit ribosomal protein S11
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G31817 : Ribosomal L18p/L5e family protein
RAP-DB (Rice) LOC_Os03g26860.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a036534
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G222900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
2 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
3 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
4 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
5 Sobic.003G214300 expressed protein -
6 Sobic.001G204100 ribosomal protein S18 containing protein, expressed -
7 Sobic.004G025300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
8 Sobic.009G004400 tRNA methyltransferase complex GCD14 subunit, putative, expressed K07442: TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
9 Sobic.010G205300 secreted salivary protein, putative, expressed -
10 Sobic.003G118400 expressed protein -
11 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
12 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
13 Sobic.001G050700 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
14 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -
15 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
16 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
17 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
18 Sobic.009G226400 dynamin family protein, putative, expressed -
19 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
20 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3


Gene co-expression network
sample Sobic009G222900 Sobic009G222900 Sobic009G219400 Sobic009G219400 Sobic009G222900--Sobic009G219400 Sobic001G404200 Sobic001G404200 Sobic009G222900--Sobic001G404200 Sobic001G061200 Sobic001G061200 Sobic009G222900--Sobic001G061200 Sobic006G094600 Sobic006G094600 Sobic009G222900--Sobic006G094600 Sobic003G214300 Sobic003G214300 Sobic009G222900--Sobic003G214300 Sobic001G204100 Sobic001G204100 Sobic009G222900--Sobic001G204100 Sobic004G025300 Sobic004G025300 Sobic009G222900--Sobic004G025300 Sobic009G004400 Sobic009G004400 Sobic009G222900--Sobic009G004400 Sobic010G205300 Sobic010G205300 Sobic009G222900--Sobic010G205300 Sobic002G394600 Sobic002G394600 Sobic009G219400--Sobic002G394600 Sobic009G219400--Sobic009G222900 Sobic005G003800 Sobic005G003800 Sobic009G219400--Sobic005G003800 Sobic004G310500 Sobic004G310500 Sobic009G219400--Sobic004G310500 Sobic009G190300 Sobic009G190300 Sobic009G219400--Sobic009G190300 Sobic002G243200 Sobic002G243200 Sobic009G219400--Sobic002G243200 Sobic001G050700 Sobic001G050700 Sobic009G219400--Sobic001G050700 Sobic008G016100 Sobic008G016100 Sobic009G219400--Sobic008G016100 Sobic002G341800 Sobic002G341800 Sobic009G219400--Sobic002G341800 Sobic001G404200--Sobic006G094600 Sobic001G332300 Sobic001G332300 Sobic001G404200--Sobic001G332300 Sobic007G118000 Sobic007G118000 Sobic001G404200--Sobic007G118000 Sobic003G374000 Sobic003G374000 Sobic001G404200--Sobic003G374000 Sobic005G184200 Sobic005G184200 Sobic001G404200--Sobic005G184200 Sobic008G110500 Sobic008G110500 Sobic001G404200--Sobic008G110500 Sobic007G014900 Sobic007G014900 Sobic001G404200--Sobic007G014900 Sobic003G148900 Sobic003G148900 Sobic001G404200--Sobic003G148900 Sobic008G145100 Sobic008G145100 Sobic001G404200--Sobic008G145100 Sobic001G193100 Sobic001G193100 Sobic001G061200--Sobic001G193100 Sobic007G173700 Sobic007G173700 Sobic001G061200--Sobic007G173700 Sobic003G222700 Sobic003G222700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic008G129600 Sobic008G129600 Sobic001G061200--Sobic008G129600 Sobic002G276800 Sobic002G276800 Sobic001G061200--Sobic002G276800 Sobic002G029300 Sobic002G029300 Sobic001G061200--Sobic002G029300 Sobic001G061200--Sobic003G148900 Sobic001G023100 Sobic001G023100 Sobic001G061200--Sobic001G023100 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic006G094600--Sobic010G205300 Sobic006G142400 Sobic006G142400 Sobic003G214300--Sobic006G142400 Sobic008G098600 Sobic008G098600 Sobic003G214300--Sobic008G098600 Sobic001G499000 Sobic001G499000 Sobic003G214300--Sobic001G499000 Sobic004G072800 Sobic004G072800 Sobic003G214300--Sobic004G072800 Sobic010G264000 Sobic010G264000 Sobic003G214300--Sobic010G264000 Sobic009G131900 Sobic009G131900 Sobic003G214300--Sobic009G131900 Sobic010G247400 Sobic010G247400 Sobic003G214300--Sobic010G247400 Sobic003G214300--Sobic001G061200 Sobic007G162800 Sobic007G162800 Sobic003G214300--Sobic007G162800 Sobic006G056600 Sobic006G056600 Sobic001G204100--Sobic006G056600 Sobic001G204100--Sobic009G222900 Sobic006G242300 Sobic006G242300 Sobic001G204100--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic001G204100--Sobic001G067900 Sobic004G011000 Sobic004G011000 Sobic001G204100--Sobic004G011000 Sobic010G251100 Sobic010G251100 Sobic001G204100--Sobic010G251100 Sobic010G184000 Sobic010G184000 Sobic001G204100--Sobic010G184000 Sobic009G193850 Sobic009G193850 Sobic001G204100--Sobic009G193850 Sobic004G283000 Sobic004G283000 Sobic001G204100--Sobic004G283000 Sobic004G025300--Sobic001G332300 Sobic004G025300--Sobic005G184200 Sobic004G207900 Sobic004G207900 Sobic004G025300--Sobic004G207900 Sobic004G025300--Sobic008G110500 Sobic001G378200 Sobic001G378200 Sobic004G025300--Sobic001G378200 Sobic006G083100 Sobic006G083100 Sobic004G025300--Sobic006G083100 Sobic001G451901 Sobic001G451901 Sobic004G025300--Sobic001G451901 Sobic005G207400 Sobic005G207400 Sobic004G025300--Sobic005G207400 Sobic001G408100 Sobic001G408100 Sobic004G025300--Sobic001G408100 Sobic009G004400--Sobic010G205300 Sobic001G491100 Sobic001G491100 Sobic009G004400--Sobic001G491100 Sobic009G004400--Sobic007G014900 Sobic004G212500 Sobic004G212500 Sobic009G004400--Sobic004G212500 Sobic009G004400--Sobic001G294900 Sobic009G004400--Sobic008G137600 Sobic009G004400--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic009G004400--Sobic004G194900 Sobic009G212300 Sobic009G212300 Sobic009G004400--Sobic009G212300 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic010G205300--Sobic001G067900
Octagon: transcription factors


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