Gene annotation
Transcriptome id Sobic.004G025300.1
Synonym GOS12, Sb04g002250, ATGOS12
Functional annotation vesicle transport v-SNARE protein, putative, expressed
UniProt C5XT73
Pfam PF12352
Panther DB PTHR21094
NCBI CDD KOG3208; SNARE protein GS28
KEGG Orthology K08495; GOSR1, golgi SNAP receptor complex member 1
Gene Ontology GO:0016021; integral component of membrane GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005801cis-Golgi network GO:0000139Golgi membrane


Orthologs (automatic annotation)
TAIR AT2G45200 : golgi snare 12
RAP-DB (Rice) LOC_Os02g03450.1 : vesicle transport v-SNARE protein, putative, expressed
MaizeGDB (Corn) Zm00025a018808
Brachypodium KQJ93078
Barley HORVU6Hr1G014800.4 , HORVU6Hr1G014800.1 , HORVU6Hr1G014800.3 , HORVU6Hr1G014800.2
Wheat TraesCS6B02G111300 , TraesCSU02G017400 , TraesCS6A02G088900
Populus -


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cDNA sequences
Sobic.004G025300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G332300 expressed protein -
2 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
3 Sobic.004G207900 nucleotide-sugar transporter family protein, putative, expressed -
4 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
5 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.006G083100 formyl transferase, putative, expressed K00601: phosphoribosylglycinamide formyltransferase
7 Sobic.001G451901 - -
8 Sobic.005G207400 - -
9 Sobic.001G408100 Yip1 domain containing protein, expressed -
10 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
11 Sobic.003G217100 Yip1 domain containing protein, expressed -
12 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
13 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
14 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
15 Sobic.007G003100 transmembrane protein 18, putative, expressed -
16 Sobic.001G358500 GA20734-PA, putative, expressed -
17 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
18 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
19 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.002G294100 DOMON domain containing protein, expressed -


Gene co-expression network
sample Sobic004G025300 Sobic004G025300 Sobic001G332300 Sobic001G332300 Sobic004G025300--Sobic001G332300 Sobic005G184200 Sobic005G184200 Sobic004G025300--Sobic005G184200 Sobic004G207900 Sobic004G207900 Sobic004G025300--Sobic004G207900 Sobic008G110500 Sobic008G110500 Sobic004G025300--Sobic008G110500 Sobic001G378200 Sobic001G378200 Sobic004G025300--Sobic001G378200 Sobic006G083100 Sobic006G083100 Sobic004G025300--Sobic006G083100 Sobic001G451901 Sobic001G451901 Sobic004G025300--Sobic001G451901 Sobic005G207400 Sobic005G207400 Sobic004G025300--Sobic005G207400 Sobic001G408100 Sobic001G408100 Sobic004G025300--Sobic001G408100 Sobic001G332300--Sobic005G184200 Sobic001G332300--Sobic001G378200 Sobic001G332300--Sobic004G025300 Sobic001G112400 Sobic001G112400 Sobic001G332300--Sobic001G112400 Sobic001G404200 Sobic001G404200 Sobic001G332300--Sobic001G404200 Sobic001G358500 Sobic001G358500 Sobic001G332300--Sobic001G358500 Sobic001G332300--Sobic006G083100 Sobic003G374000 Sobic003G374000 Sobic001G332300--Sobic003G374000 Sobic002G136400 Sobic002G136400 Sobic001G332300--Sobic002G136400 Sobic005G184200--Sobic001G112400 Sobic003G116600 Sobic003G116600 Sobic005G184200--Sobic003G116600 Sobic001G443200 Sobic001G443200 Sobic005G184200--Sobic001G443200 Sobic003G217100 Sobic003G217100 Sobic005G184200--Sobic003G217100 Sobic005G184200--Sobic001G332300 Sobic004G344800 Sobic004G344800 Sobic005G184200--Sobic004G344800 Sobic002G090700 Sobic002G090700 Sobic005G184200--Sobic002G090700 Sobic005G184200--Sobic001G378200 Sobic005G184200--Sobic008G110500 Sobic001G161700 Sobic001G161700 Sobic004G207900--Sobic001G161700 Sobic009G077600 Sobic009G077600 Sobic004G207900--Sobic009G077600 Sobic004G100200 Sobic004G100200 Sobic004G207900--Sobic004G100200 Sobic001G023100 Sobic001G023100 Sobic004G207900--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic004G207900--Sobic003G346400 Sobic004G207900--Sobic004G025300 Sobic002G141700 Sobic002G141700 Sobic004G207900--Sobic002G141700 Sobic008G129600 Sobic008G129600 Sobic004G207900--Sobic008G129600 Sobic002G294100 Sobic002G294100 Sobic004G207900--Sobic002G294100 Sobic008G110500--Sobic001G443200 Sobic003G148900 Sobic003G148900 Sobic008G110500--Sobic003G148900 Sobic008G102600 Sobic008G102600 Sobic008G110500--Sobic008G102600 Sobic001G387800 Sobic001G387800 Sobic008G110500--Sobic001G387800 Sobic008G145100 Sobic008G145100 Sobic008G110500--Sobic008G145100 Sobic010G040900 Sobic010G040900 Sobic008G110500--Sobic010G040900 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic003G196200 Sobic003G196200 Sobic008G110500--Sobic003G196200 Sobic001G465400 Sobic001G465400 Sobic001G378200--Sobic001G465400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic001G378200--Sobic005G207400 Sobic006G083100--Sobic001G332300 Sobic007G112600 Sobic007G112600 Sobic006G083100--Sobic007G112600 Sobic001G211900 Sobic001G211900 Sobic006G083100--Sobic001G211900 Sobic006G083100--Sobic001G112400 Sobic006G083100--Sobic004G025300 Sobic006G083100--Sobic001G358500 Sobic006G083100--Sobic001G378200 Sobic001G099900 Sobic001G099900 Sobic006G083100--Sobic001G099900 Sobic006G142400 Sobic006G142400 Sobic006G083100--Sobic006G142400 Sobic001G110300 Sobic001G110300 Sobic001G451901--Sobic001G110300 Sobic001G060300 Sobic001G060300 Sobic001G451901--Sobic001G060300 Sobic004G184000 Sobic004G184000 Sobic001G451901--Sobic004G184000 Sobic001G129400 Sobic001G129400 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic010G194200 Sobic010G194200 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic001G451901--Sobic004G025300 Sobic001G451901--Sobic003G217100 Sobic005G207400--Sobic001G378200 Sobic005G207400--Sobic004G025300 Sobic005G207400--Sobic004G078700 Sobic001G261432 Sobic001G261432 Sobic005G207400--Sobic001G261432 Sobic005G207400--Sobic001G332300 Sobic007G077532 Sobic007G077532 Sobic005G207400--Sobic007G077532 Sobic001G312500 Sobic001G312500 Sobic005G207400--Sobic001G312500 Sobic001G127000 Sobic001G127000 Sobic005G207400--Sobic001G127000 Sobic003G202600 Sobic003G202600 Sobic005G207400--Sobic003G202600 Sobic001G408100--Sobic003G217100 Sobic003G052400 Sobic003G052400 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic010G017000 Sobic010G017000 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic006G222400 Sobic006G222400 Sobic001G408100--Sobic006G222400 Sobic001G214200 Sobic001G214200 Sobic001G408100--Sobic001G214200 Sobic001G408100--Sobic004G025300 Sobic003G038600 Sobic003G038600 Sobic001G408100--Sobic003G038600
Octagon: transcription factors


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