Gene annotation
Transcriptome id Sobic.001G206900.1
Synonym Sb01g018290
Functional annotation vacuolar protein-sorting protein bro1, putative, expressed
UniProt A0A1Z5S6W9
Pfam PF13949 PF03097
Panther DB PTHR23030
NCBI CDD KOG2220; Predicted signal transduction protein
KEGG Orthology K12200; PDCD6IP, ALIX, programmed cell death 6-interacting protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G15130 : Endosomal targeting BRO1-like domain-containing protein
RAP-DB (Rice) LOC_Os10g35250.1 : vacuolar protein-sorting protein bro1, putative, expressed
MaizeGDB (Corn) Zm00025a006474 , Zm00025a017546 , Zm00025a021007
Brachypodium KQJ97286
Barley HORVU1Hr1G043660.6 , HORVU1Hr1G043660.7 , HORVU1Hr1G043660.4 , HORVU1Hr1G043660.5 , HORVU1Hr1G043660.2 , HORVU1Hr1G043660.3 , HORVU1Hr1G043660.1 , HORVU6Hr1G060100.1
Wheat TraesCS1D02G150400 , TraesCS1B02G180900 , TraesCS1B02G180900 , TraesCS1B02G180900 , TraesCS6B02G263700 , TraesCS6A02G235000 , TraesCS1D02G161000 , TraesCS1D02G161000 , TraesCS1D02G161000 , TraesCS6D02G217600 , TraesCS1A02G164000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
2 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
3 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.004G181900 expressed protein -
5 Sobic.001G085100 expressed protein -
6 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
7 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
8 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
9 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
10 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
11 Sobic.004G348900 expressed protein -
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
14 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
15 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
16 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
17 Sobic.001G261436 - -
18 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
19 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
20 Sobic.009G228700 expressed protein -


Gene co-expression network
sample Sobic001G206900 Sobic001G206900 Sobic001G323000 Sobic001G323000 Sobic001G206900--Sobic001G323000 Sobic003G312200 Sobic003G312200 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic004G181900 Sobic004G181900 Sobic001G206900--Sobic004G181900 Sobic001G085100 Sobic001G085100 Sobic001G206900--Sobic001G085100 Sobic009G149500 Sobic009G149500 Sobic001G206900--Sobic009G149500 Sobic006G148200 Sobic006G148200 Sobic001G206900--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G206900--Sobic007G167900 Sobic003G349300 Sobic003G349300 Sobic001G206900--Sobic003G349300 Sobic001G323000--Sobic001G206900 Sobic006G034000 Sobic006G034000 Sobic001G323000--Sobic006G034000 Sobic009G228700 Sobic009G228700 Sobic001G323000--Sobic009G228700 Sobic001G057800 Sobic001G057800 Sobic001G323000--Sobic001G057800 Sobic001G323000--Sobic003G312200 Sobic001G323000--Sobic006G148200 Sobic009G207000 Sobic009G207000 Sobic001G323000--Sobic009G207000 Sobic010G000900 Sobic010G000900 Sobic001G323000--Sobic010G000900 Sobic001G323000--Sobic001G085100 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic004G010900--Sobic001G206900 Sobic001G458700 Sobic001G458700 Sobic004G010900--Sobic001G458700 Sobic004G082900 Sobic004G082900 Sobic004G010900--Sobic004G082900 Sobic006G252200 Sobic006G252200 Sobic004G010900--Sobic006G252200 Sobic010G205300 Sobic010G205300 Sobic004G010900--Sobic010G205300 Sobic003G261400 Sobic003G261400 Sobic004G010900--Sobic003G261400 Sobic001G338400 Sobic001G338400 Sobic004G010900--Sobic001G338400 Sobic001G283200 Sobic001G283200 Sobic004G010900--Sobic001G283200 Sobic004G010900--Sobic003G349300 Sobic004G181900--Sobic001G206900 Sobic004G181900--Sobic003G349300 Sobic004G181900--Sobic001G283200 Sobic004G181900--Sobic010G205300 Sobic006G281800 Sobic006G281800 Sobic004G181900--Sobic006G281800 Sobic009G225000 Sobic009G225000 Sobic004G181900--Sobic009G225000 Sobic004G348900 Sobic004G348900 Sobic004G181900--Sobic004G348900 Sobic004G181900--Sobic009G149500 Sobic004G181900--Sobic001G085100 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G085100--Sobic001G261436 Sobic001G085100--Sobic006G148200 Sobic001G085100--Sobic007G167900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic009G149500--Sobic001G206900 Sobic010G020400 Sobic010G020400 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic010G223300 Sobic010G223300 Sobic009G149500--Sobic010G223300 Sobic001G014800 Sobic001G014800 Sobic009G149500--Sobic001G014800 Sobic009G192000 Sobic009G192000 Sobic009G149500--Sobic009G192000 Sobic009G149500--Sobic004G181900 Sobic009G149500--Sobic004G010900 Sobic003G338500 Sobic003G338500 Sobic009G149500--Sobic003G338500 Sobic004G274400 Sobic004G274400 Sobic006G148200--Sobic004G274400 Sobic006G148200--Sobic001G085100 Sobic006G148200--Sobic006G034000 Sobic006G148200--Sobic001G323000 Sobic006G148200--Sobic009G228700 Sobic001G033500 Sobic001G033500 Sobic006G148200--Sobic001G033500 Sobic006G148200--Sobic001G206900 Sobic006G148200--Sobic010G000900 Sobic001G048700 Sobic001G048700 Sobic006G148200--Sobic001G048700 Sobic007G167900--Sobic001G085100 Sobic007G167900--Sobic009G192000 Sobic004G092500 Sobic004G092500 Sobic007G167900--Sobic004G092500 Sobic007G167900--Sobic001G206900 Sobic002G047700 Sobic002G047700 Sobic007G167900--Sobic002G047700 Sobic007G167900--Sobic006G101700 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic009G135600 Sobic009G135600 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic003G349300--Sobic004G181900 Sobic003G349300--Sobic009G192000 Sobic003G349300--Sobic001G283200 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600
Octagon: transcription factors


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