Gene annotation
Transcriptome id Sobic.006G281800.1
Synonym Sb06g034200, ATRABC1, RABC1, ATRAB-C1, RAB18, ATRAB18, RAB18-1
Functional annotation ras-related protein, putative, expressed
UniProt C5YB63
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF598
NCBI CDD KOG0080; GTPase Rab18, small G protein superfamily
KEGG Orthology K07910; Ras-related protein Rab-18
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G43890 : RAB GTPASE HOMOLOG B18
RAP-DB (Rice) LOC_Os10g31830.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a057511 , Zm00025a010578 , Zm00025a051086
Brachypodium KQK18040 , KQJ85531
Barley HORVU2Hr1G127540.1 , HORVU2Hr1G127540.2 , HORVU1Hr1G025450.1 , HORVU1Hr1G025450.3 , HORVU1Hr1G025450.2 , HORVU2Hr1G127520.1
Wheat TraesCS3A02G421700 , TraesCS3A02G421700 , TraesCS2B02G617000 , TraesCSU02G137100
Populus -


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cDNA sequences
Sobic.006G281800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G225000 transmembrane protein 93, putative, expressed -
2 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
3 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
4 Sobic.004G181900 expressed protein -
5 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
6 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
7 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
8 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
9 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
10 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
11 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
12 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
13 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
14 Sobic.010G000900 spotted leaf 11, putative, expressed -
15 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
16 Sobic.010G205300 secreted salivary protein, putative, expressed -
17 Sobic.001G085100 expressed protein -
18 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
19 Sobic.004G348900 expressed protein -
20 Sobic.004G194900 expressed protein -


Gene co-expression network
sample Sobic006G281800 Sobic006G281800 Sobic009G225000 Sobic009G225000 Sobic006G281800--Sobic009G225000 Sobic003G349300 Sobic003G349300 Sobic006G281800--Sobic003G349300 Sobic001G283200 Sobic001G283200 Sobic006G281800--Sobic001G283200 Sobic004G181900 Sobic004G181900 Sobic006G281800--Sobic004G181900 Sobic001G206900 Sobic001G206900 Sobic006G281800--Sobic001G206900 Sobic002G385900 Sobic002G385900 Sobic006G281800--Sobic002G385900 Sobic004G206700 Sobic004G206700 Sobic006G281800--Sobic004G206700 Sobic010G064600 Sobic010G064600 Sobic006G281800--Sobic010G064600 Sobic003G312200 Sobic003G312200 Sobic006G281800--Sobic003G312200 Sobic009G225000--Sobic006G281800 Sobic009G225000--Sobic001G283200 Sobic004G194900 Sobic004G194900 Sobic009G225000--Sobic004G194900 Sobic009G225000--Sobic004G181900 Sobic001G461900 Sobic001G461900 Sobic009G225000--Sobic001G461900 Sobic007G142500 Sobic007G142500 Sobic009G225000--Sobic007G142500 Sobic001G460600 Sobic001G460600 Sobic009G225000--Sobic001G460600 Sobic009G225000--Sobic004G206700 Sobic009G225000--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic009G135600 Sobic009G135600 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic001G283200--Sobic004G181900 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic004G181900--Sobic001G206900 Sobic004G181900--Sobic003G349300 Sobic004G181900--Sobic001G283200 Sobic004G181900--Sobic010G205300 Sobic004G181900--Sobic006G281800 Sobic004G181900--Sobic009G225000 Sobic004G181900--Sobic004G348900 Sobic009G149500 Sobic009G149500 Sobic004G181900--Sobic009G149500 Sobic001G085100 Sobic001G085100 Sobic004G181900--Sobic001G085100 Sobic001G323000 Sobic001G323000 Sobic001G206900--Sobic001G323000 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic001G206900--Sobic004G181900 Sobic001G206900--Sobic001G085100 Sobic001G206900--Sobic009G149500 Sobic006G148200 Sobic006G148200 Sobic001G206900--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G206900--Sobic007G167900 Sobic001G206900--Sobic003G349300 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic002G385900--Sobic006G281800 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic001G199100 Sobic001G199100 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic004G206700--Sobic006G180000 Sobic009G123600 Sobic009G123600 Sobic004G206700--Sobic009G123600 Sobic002G059300 Sobic002G059300 Sobic004G206700--Sobic002G059300 Sobic004G206700--Sobic004G194900 Sobic003G087000 Sobic003G087000 Sobic010G064600--Sobic003G087000 Sobic008G093000 Sobic008G093000 Sobic010G064600--Sobic008G093000 Sobic010G261600 Sobic010G261600 Sobic010G064600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500
Octagon: transcription factors


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