Gene annotation
Transcriptome id Sobic.002G166900.1,Sobic.002G166900.2
Synonym Sb02g021080, UBC36, UBC13B
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A1B6QBT2 , A0A1B6QBU9
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF159
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10580; UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16890 : ubiquitin-conjugating enzyme 36
RAP-DB (Rice) LOC_Os01g48280.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a028086 , Zm00025a044546
Brachypodium KQK04916 , PNT72562 , PNT64359 , PNT64356 , PNT64365 , PNT64372 , PNT64376 , PNT64374 , PNT64379 , KQJ89818 , PNT64367 , PNT64362
Barley HORVU3Hr1G061790.4 , HORVU3Hr1G061790.1 , HORVU3Hr1G061790.3 , HORVU1Hr1G086610.1 , HORVU1Hr1G086610.2 , HORVU1Hr1G086480.1 , HORVU1Hr1G086480.2 , HORVU5Hr1G055360.1 , HORVU5Hr1G055360.2 , HORVU5Hr1G055360.3 , HORVU5Hr1G055360.4 , HORVU5Hr1G055360.5 , HORVU5Hr1G055360.6 , HORVU5Hr1G055360.7 , HORVU5Hr1G055360.8
Wheat TraesCS5D02G186100 , TraesCS3A02G271800 , TraesCS5D02G186100 , TraesCS1B02G420600 , TraesCS3B02G305500 , TraesCS1A02G392400 , TraesCS5B02G179700 , TraesCS5B02G179700 , TraesCS5A02G181700 , TraesCS1D02G400600 , TraesCS3D02G271400
Populus -


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cDNA sequences
Sobic.002G166900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G090000 DUF1771 domain containing protein, putative, expressed -
2 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
3 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
4 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
5 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.004G167400 expressed protein -
7 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
8 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
9 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
10 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
11 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
12 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
13 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
14 Sobic.010G000900 spotted leaf 11, putative, expressed -
15 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
16 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
17 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
18 Sobic.004G348900 expressed protein -
19 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
20 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5


Gene co-expression network
sample Sobic002G166900 Sobic002G166900 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic001G283200 Sobic001G283200 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic006G090000--Sobic002G166900 Sobic006G092400 Sobic006G092400 Sobic006G090000--Sobic006G092400 Sobic010G000900 Sobic010G000900 Sobic006G090000--Sobic010G000900 Sobic006G090000--Sobic004G067100 Sobic001G414500 Sobic001G414500 Sobic006G090000--Sobic001G414500 Sobic003G077900 Sobic003G077900 Sobic006G090000--Sobic003G077900 Sobic007G179800 Sobic007G179800 Sobic006G090000--Sobic007G179800 Sobic006G090000--Sobic004G321900 Sobic006G090000--Sobic001G283200 Sobic004G080100 Sobic004G080100 Sobic004G067100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic004G067100--Sobic003G246700 Sobic004G067100--Sobic002G166900 Sobic003G117900 Sobic003G117900 Sobic004G067100--Sobic003G117900 Sobic001G508100 Sobic001G508100 Sobic004G067100--Sobic001G508100 Sobic004G067100--Sobic004G167400 Sobic002G226900 Sobic002G226900 Sobic004G067100--Sobic002G226900 Sobic004G067100--Sobic006G090000 Sobic004G067100--Sobic003G077900 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic009G135600 Sobic009G135600 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic010G188100--Sobic001G220400 Sobic009G219900 Sobic009G219900 Sobic010G188100--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic004G167400--Sobic010G000900 Sobic004G167400--Sobic002G166900 Sobic001G329100 Sobic001G329100 Sobic004G167400--Sobic001G329100 Sobic003G257000 Sobic003G257000 Sobic004G167400--Sobic003G257000 Sobic010G253800 Sobic010G253800 Sobic004G167400--Sobic010G253800 Sobic002G352700 Sobic002G352700 Sobic004G167400--Sobic002G352700 Sobic004G167400--Sobic003G117900 Sobic004G167400--Sobic001G057800 Sobic010G229400 Sobic010G229400 Sobic004G167400--Sobic010G229400 Sobic003G248600 Sobic003G248600 Sobic004G321900--Sobic003G248600 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic009G005900 Sobic009G005900 Sobic004G321900--Sobic009G005900 Sobic009G257600 Sobic009G257600 Sobic004G321900--Sobic009G257600 Sobic007G168600 Sobic007G168600 Sobic004G321900--Sobic007G168600 Sobic001G440700 Sobic001G440700 Sobic004G321900--Sobic001G440700 Sobic004G321900--Sobic001G283200 Sobic003G220600 Sobic003G220600 Sobic004G321900--Sobic003G220600 Sobic002G393500 Sobic002G393500 Sobic004G212200--Sobic002G393500 Sobic009G228800 Sobic009G228800 Sobic004G212200--Sobic009G228800 Sobic004G212200--Sobic003G261400 Sobic003G274800 Sobic003G274800 Sobic004G212200--Sobic003G274800 Sobic004G212200--Sobic010G000900 Sobic001G388200 Sobic001G388200 Sobic004G212200--Sobic001G388200 Sobic004G212200--Sobic002G166900 Sobic003G261500 Sobic003G261500 Sobic004G212200--Sobic003G261500 Sobic001G512300 Sobic001G512300 Sobic004G212200--Sobic001G512300 Sobic001G220400--Sobic010G188100 Sobic001G220400--Sobic009G219900 Sobic001G220400--Sobic010G101500 Sobic001G220400--Sobic003G077900 Sobic001G220400--Sobic003G367451 Sobic001G220400--Sobic003G220600 Sobic001G220400--Sobic009G001400 Sobic006G163000 Sobic006G163000 Sobic001G220400--Sobic006G163000 Sobic002G122700 Sobic002G122700 Sobic001G220400--Sobic002G122700
Octagon: transcription factors


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