Gene annotation
Transcriptome id Sobic.006G090000.1
Synonym Sb06g017530
Functional annotation DUF1771 domain containing protein, putative, expressed
UniProt C5Y8V4
Pfam PF01713 PF08590
Panther DB PTHR13308
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23520 : smr (Small MutS Related) domain-containing protein
RAP-DB (Rice) LOC_Os04g36058.2 : DUF1771 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ82850 , KQJ82849
Barley HORVU2Hr1G076970.15 , HORVU2Hr1G076970.14 , HORVU2Hr1G076970.16 , HORVU2Hr1G076970.13
Wheat TraesCS2D02G307800 , TraesCS2A02G309500
Populus -


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cDNA sequences
Sobic.006G090000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
2 Sobic.006G092400 calmodulin binding protein, putative, expressed -
3 Sobic.010G000900 spotted leaf 11, putative, expressed -
4 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
5 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
6 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
7 Sobic.007G179800 TBC domain containing protein, expressed -
8 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
9 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
10 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
11 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
12 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
13 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
14 Sobic.004G167400 expressed protein -
15 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
16 Sobic.003G261500 lipase, putative, expressed -
17 Sobic.009G222500 expressed protein -
18 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
19 Sobic.010G074300 smr domain containing protein, expressed -
20 Sobic.004G350300 No apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic006G090000 Sobic006G090000 Sobic002G166900 Sobic002G166900 Sobic006G090000--Sobic002G166900 Sobic006G092400 Sobic006G092400 Sobic006G090000--Sobic006G092400 Sobic010G000900 Sobic010G000900 Sobic006G090000--Sobic010G000900 Sobic004G067100 Sobic004G067100 Sobic006G090000--Sobic004G067100 Sobic001G414500 Sobic001G414500 Sobic006G090000--Sobic001G414500 Sobic003G077900 Sobic003G077900 Sobic006G090000--Sobic003G077900 Sobic007G179800 Sobic007G179800 Sobic006G090000--Sobic007G179800 Sobic004G321900 Sobic004G321900 Sobic006G090000--Sobic004G321900 Sobic001G283200 Sobic001G283200 Sobic006G090000--Sobic001G283200 Sobic002G166900--Sobic006G090000 Sobic002G166900--Sobic004G067100 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic006G092400--Sobic007G179800 Sobic002G130800 Sobic002G130800 Sobic006G092400--Sobic002G130800 Sobic006G209400 Sobic006G209400 Sobic006G092400--Sobic006G209400 Sobic010G074300 Sobic010G074300 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic001G508100 Sobic001G508100 Sobic006G092400--Sobic001G508100 Sobic003G220800 Sobic003G220800 Sobic006G092400--Sobic003G220800 Sobic006G092400--Sobic006G090000 Sobic010G147100 Sobic010G147100 Sobic006G092400--Sobic010G147100 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic004G080100 Sobic004G080100 Sobic004G067100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic004G067100--Sobic003G246700 Sobic004G067100--Sobic002G166900 Sobic003G117900 Sobic003G117900 Sobic004G067100--Sobic003G117900 Sobic004G067100--Sobic001G508100 Sobic004G067100--Sobic004G167400 Sobic002G226900 Sobic002G226900 Sobic004G067100--Sobic002G226900 Sobic004G067100--Sobic006G090000 Sobic004G067100--Sobic003G077900 Sobic008G089900 Sobic008G089900 Sobic001G414500--Sobic008G089900 Sobic009G219900 Sobic009G219900 Sobic001G414500--Sobic009G219900 Sobic006G261300 Sobic006G261300 Sobic001G414500--Sobic006G261300 Sobic001G414500--Sobic006G092400 Sobic002G217400 Sobic002G217400 Sobic001G414500--Sobic002G217400 Sobic001G414500--Sobic003G077900 Sobic002G290400 Sobic002G290400 Sobic001G414500--Sobic002G290400 Sobic001G414500--Sobic006G090000 Sobic001G503300 Sobic001G503300 Sobic001G414500--Sobic001G503300 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic003G077900--Sobic009G219900 Sobic003G077900--Sobic004G130900 Sobic007G179800--Sobic006G092400 Sobic001G121200 Sobic001G121200 Sobic007G179800--Sobic001G121200 Sobic006G033200 Sobic006G033200 Sobic007G179800--Sobic006G033200 Sobic007G179800--Sobic003G220800 Sobic010G020300 Sobic010G020300 Sobic007G179800--Sobic010G020300 Sobic001G390800 Sobic001G390800 Sobic007G179800--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic007G179800--Sobic002G311100 Sobic007G179800--Sobic010G147100 Sobic003G312200 Sobic003G312200 Sobic007G179800--Sobic003G312200 Sobic003G248600 Sobic003G248600 Sobic004G321900--Sobic003G248600 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic009G005900 Sobic009G005900 Sobic004G321900--Sobic009G005900 Sobic009G257600 Sobic009G257600 Sobic004G321900--Sobic009G257600 Sobic004G321900--Sobic007G168600 Sobic001G440700 Sobic001G440700 Sobic004G321900--Sobic001G440700 Sobic004G321900--Sobic001G283200 Sobic003G220600 Sobic003G220600 Sobic004G321900--Sobic003G220600 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900
Octagon: transcription factors


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