Gene annotation
Transcriptome id Sobic.001G220400.1
Synonym VPS2.3, Sb01g019380
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5WYG6
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF15
NCBI CDD KOG3230; Vacuolar assembly/sorting protein DID4
KEGG Orthology K12192; charged multivesicular body protein 2B
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT1G03950 : vacuolar protein sorting-associated protein 2.3
RAP-DB (Rice) LOC_Os10g33660.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006617
Brachypodium KQJ97084
Barley HORVU1Hr1G040930.7 , HORVU1Hr1G040930.6 , HORVU1Hr1G040930.5 , HORVU1Hr1G040930.4 , HORVU1Hr1G040930.3 , HORVU1Hr1G040930.2 , HORVU1Hr1G040930.1 , HORVU1Hr1G040930.9 , HORVU1Hr1G040930.8 , HORVU1Hr1G040930.12 , HORVU1Hr1G040930.11 , HORVU1Hr1G040930.10
Wheat TraesCS1B02G171400 , TraesCS1D02G152000 , TraesCS1A02G153600
Populus PNT38179


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cDNA sequences
Sobic.001G220400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
3 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
4 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
5 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
6 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
7 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
8 Sobic.006G163000 src homology-3 domain protein 3, putative, expressed -
9 Sobic.002G122700 expressed protein -
10 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
11 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
12 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
14 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
15 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
17 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.005G095900 cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed -
19 Sobic.002G083266 - K00326: cytochrome-b5 reductase
20 Sobic.001G162100 WRKY94, expressed -


Gene co-expression network
sample Sobic001G220400 Sobic001G220400 Sobic010G188100 Sobic010G188100 Sobic001G220400--Sobic010G188100 Sobic009G219900 Sobic009G219900 Sobic001G220400--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic001G220400--Sobic010G101500 Sobic003G077900 Sobic003G077900 Sobic001G220400--Sobic003G077900 Sobic003G367451 Sobic003G367451 Sobic001G220400--Sobic003G367451 Sobic003G220600 Sobic003G220600 Sobic001G220400--Sobic003G220600 Sobic009G001400 Sobic009G001400 Sobic001G220400--Sobic009G001400 Sobic006G163000 Sobic006G163000 Sobic001G220400--Sobic006G163000 Sobic002G122700 Sobic002G122700 Sobic001G220400--Sobic002G122700 Sobic010G188100--Sobic001G220400 Sobic010G188100--Sobic009G219900 Sobic010G188100--Sobic010G101500 Sobic010G188100--Sobic003G367451 Sobic010G188100--Sobic003G077900 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic009G219900--Sobic010G188100 Sobic009G219900--Sobic001G220400 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic010G101500--Sobic010G188100 Sobic010G101500--Sobic003G220600 Sobic010G101500--Sobic001G220400 Sobic002G045300 Sobic002G045300 Sobic010G101500--Sobic002G045300 Sobic010G101500--Sobic003G077900 Sobic001G440700 Sobic001G440700 Sobic010G101500--Sobic001G440700 Sobic010G101500--Sobic002G122700 Sobic010G101500--Sobic002G400000 Sobic010G101500--Sobic009G219900 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic009G001400--Sobic007G114200 Sobic009G001400--Sobic010G188100 Sobic001G040800 Sobic001G040800 Sobic009G001400--Sobic001G040800 Sobic009G001400--Sobic003G367451 Sobic002G363100 Sobic002G363100 Sobic009G001400--Sobic002G363100 Sobic009G001400--Sobic001G220400 Sobic006G182100 Sobic006G182100 Sobic009G001400--Sobic006G182100 Sobic010G018400 Sobic010G018400 Sobic009G001400--Sobic010G018400 Sobic009G001400--Sobic003G220600 Sobic006G163000--Sobic001G220400 Sobic006G163000--Sobic002G045300 Sobic004G234900 Sobic004G234900 Sobic006G163000--Sobic004G234900 Sobic006G163000--Sobic002G122700 Sobic006G163000--Sobic003G220600 Sobic006G163000--Sobic010G101500 Sobic004G271700 Sobic004G271700 Sobic006G163000--Sobic004G271700 Sobic006G163000--Sobic009G219900 Sobic002G413000 Sobic002G413000 Sobic006G163000--Sobic002G413000 Sobic002G122700--Sobic004G234900 Sobic002G122700--Sobic006G225600 Sobic001G434900 Sobic001G434900 Sobic002G122700--Sobic001G434900 Sobic002G122700--Sobic010G101500 Sobic002G122700--Sobic001G220400 Sobic001G329100 Sobic001G329100 Sobic002G122700--Sobic001G329100 Sobic010G000900 Sobic010G000900 Sobic002G122700--Sobic010G000900 Sobic002G122700--Sobic010G188100 Sobic002G122700--Sobic003G248600
Octagon: transcription factors


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