Gene annotation
Transcriptome id Sobic.002G045300.1
Synonym UBC2, Sb02g003870, ATUBC2
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5XAB9
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF128
NCBI CDD KOG0419; Ubiquitin-protein ligase
KEGG Orthology K10573; UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02760 : ubiquiting-conjugating enzyme 2
RAP-DB (Rice) LOC_Os07g07240.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a016107 , Zm00025a008519 , Zm00025a016589 , Zm00025a045096
Brachypodium KQK20729 , KQK20730 , KQK12807
Barley HORVU5Hr1G104090.2 , HORVU5Hr1G104090.1 , HORVU4Hr1G033410.3 , HORVU4Hr1G033410.2 , HORVU4Hr1G033410.1 , HORVU4Hr1G033410.4 , HORVU7Hr1G034980.2 , HORVU7Hr1G034980.1
Wheat TraesCS5B02G431100 , TraesCS5B02G431100 , TraesCS5B02G431100 , TraesCS2A02G247700 , TraesCS2A02G247700 , TraesCS2A02G247700 , TraesCS2D02G248000 , TraesCS2D02G248000 , TraesCS2D02G248000 , TraesCS5A02G429000 , TraesCS5A02G429000 , TraesCS5A02G429000 , TraesCS2B02G270000 , TraesCS2B02G270000 , TraesCS2B02G270000 , TraesCS5D02G437100 , TraesCS5D02G437100 , TraesCS5D02G437100
Populus -


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cDNA sequences
Sobic.002G045300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
5 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
6 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
7 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
8 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
9 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
10 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
11 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
12 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
13 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
14 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
15 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.009G203100 expressed protein -
17 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
18 Sobic.007G059900 DUF292 domain containing protein, expressed -
19 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
20 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other


Gene co-expression network
sample Sobic002G045300 Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic002G045300--Sobic001G433400 Sobic010G042100 Sobic010G042100 Sobic002G045300--Sobic010G042100 Sobic003G253000 Sobic003G253000 Sobic002G045300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic003G367451 Sobic003G367451 Sobic002G045300--Sobic003G367451 Sobic003G130800 Sobic003G130800 Sobic002G045300--Sobic003G130800 Sobic009G135600 Sobic009G135600 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic001G433400--Sobic002G045300 Sobic002G400000 Sobic002G400000 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic001G433400--Sobic003G220600 Sobic004G327300 Sobic004G327300 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic010G042100--Sobic002G045300 Sobic010G042100--Sobic001G433400 Sobic003G117900 Sobic003G117900 Sobic010G042100--Sobic003G117900 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic010G042100--Sobic003G367451 Sobic010G042100--Sobic003G253000 Sobic004G020000 Sobic004G020000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic004G049900--Sobic004G050000 Sobic001G415500 Sobic001G415500 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600 Sobic003G130800--Sobic009G185800 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic003G130800--Sobic002G345300 Sobic003G130800--Sobic004G049900 Sobic004G055200 Sobic004G055200 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G181500 Sobic003G181500 Sobic003G130800--Sobic003G181500 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic009G135600--Sobic001G433400 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic010G188100 Sobic010G188100 Sobic010G101500--Sobic010G188100 Sobic010G101500--Sobic003G220600 Sobic001G220400 Sobic001G220400 Sobic010G101500--Sobic001G220400 Sobic010G101500--Sobic002G045300 Sobic003G077900 Sobic003G077900 Sobic010G101500--Sobic003G077900 Sobic001G440700 Sobic001G440700 Sobic010G101500--Sobic001G440700 Sobic002G122700 Sobic002G122700 Sobic010G101500--Sobic002G122700 Sobic010G101500--Sobic002G400000 Sobic009G219900 Sobic009G219900 Sobic010G101500--Sobic009G219900
Octagon: transcription factors


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