Gene annotation
Transcriptome id Sobic.007G059900.1,Sobic.007G059900.2
Synonym Sb07g004770
Functional annotation DUF292 domain containing protein, expressed
UniProt A0A1B6PFV7 , A0A1B6PG13
Pfam PF03398
Panther DB PTHR12161 PTHR12161:SF21
NCBI CDD KOG2027; Spindle pole body protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G34220 : Regulator of Vps4 activity in the MVB pathway protein
RAP-DB (Rice) LOC_Os08g07830.1 : DUF292 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003048 , Zm00025a030363 , Zm00025a030018 , Zm00025a055011
Brachypodium KQJ95189 , KQJ95188
Barley HORVU3Hr1G098720.4 , HORVU3Hr1G098720.1 , HORVU3Hr1G098720.3 , HORVU3Hr1G098720.2
Wheat TraesCS3D02G451700 , TraesCS3A02G459100 , TraesCS3B02G498800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
3 Sobic.010G204300 expressed protein -
4 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
5 Sobic.002G261900 arabinogalactan protein, putative, expressed -
6 Sobic.008G161000 protein kinase domain containing protein, expressed -
7 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
8 Sobic.002G296300 expressed protein -
9 Sobic.009G152200 OsFBT7 - F-box and tubby domain containing protein, expressed -
10 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
11 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
12 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
13 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
14 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
15 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
16 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
17 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
19 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
20 Sobic.009G171700 SAG20, putative, expressed -


Gene co-expression network
sample Sobic007G059900 Sobic007G059900 Sobic003G220600 Sobic003G220600 Sobic007G059900--Sobic003G220600 Sobic006G062800 Sobic006G062800 Sobic007G059900--Sobic006G062800 Sobic010G204300 Sobic010G204300 Sobic007G059900--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic007G059900--Sobic007G186300 Sobic002G261900 Sobic002G261900 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic004G293700 Sobic004G293700 Sobic007G059900--Sobic004G293700 Sobic002G296300 Sobic002G296300 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic003G220600--Sobic007G059900 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic010G213400 Sobic010G213400 Sobic006G062800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic006G062800--Sobic003G249800 Sobic003G285800 Sobic003G285800 Sobic006G062800--Sobic003G285800 Sobic006G062800--Sobic007G059900 Sobic009G129000 Sobic009G129000 Sobic006G062800--Sobic009G129000 Sobic002G218000 Sobic002G218000 Sobic006G062800--Sobic002G218000 Sobic006G062800--Sobic002G202300 Sobic009G033700 Sobic009G033700 Sobic006G062800--Sobic009G033700 Sobic006G062800--Sobic002G261900 Sobic010G204300--Sobic008G161000 Sobic010G204300--Sobic003G115800 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic010G204300--Sobic002G296300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000 Sobic003G007500 Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic007G186300--Sobic010G083700 Sobic007G186300--Sobic009G146100 Sobic007G186300--Sobic009G152200 Sobic002G261900--Sobic006G062800 Sobic002G261900--Sobic007G059900 Sobic002G083266 Sobic002G083266 Sobic002G261900--Sobic002G083266 Sobic001G311100 Sobic001G311100 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic003G043400 Sobic003G043400 Sobic002G261900--Sobic003G043400 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic008G161000--Sobic009G152200 Sobic001G037000 Sobic001G037000 Sobic008G161000--Sobic001G037000 Sobic008G161000--Sobic009G129000 Sobic009G016201 Sobic009G016201 Sobic008G161000--Sobic009G016201 Sobic008G161000--Sobic010G204300 Sobic010G204600 Sobic010G204600 Sobic008G161000--Sobic010G204600 Sobic008G161000--Sobic010G213400 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic004G293700--Sobic010G083700 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic006G141500 Sobic006G141500 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic002G296300--Sobic010G204300 Sobic002G296300--Sobic007G186300 Sobic002G296300--Sobic003G220600 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic002G296300--Sobic003G007500 Sobic009G152200--Sobic008G161000 Sobic009G152200--Sobic007G186300 Sobic009G152200--Sobic007G059900 Sobic009G152200--Sobic001G403700 Sobic001G330700 Sobic001G330700 Sobic009G152200--Sobic001G330700 Sobic009G152200--Sobic009G016201 Sobic009G152200--Sobic003G115800 Sobic009G152200--Sobic003G248600 Sobic009G152200--Sobic003G249800
Octagon: transcription factors


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