Gene annotation
Transcriptome id Sobic.003G115800.1
Synonym ATSAR2, ATSARA1C, SAR2, ASAR1, Sb03g009760
Functional annotation miro, putative, expressed
UniProt C5XFU1
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF203
NCBI CDD KOG0077; Vesicle coat complex COPII, GTPase subunit SAR1
KEGG Orthology K07953; GTP-binding protein SAR1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT4G02080 : secretion-associated RAS super family 2
RAP-DB (Rice) LOC_Os01g15010.1 : miro, putative, expressed
MaizeGDB (Corn) Zm00025a036193 , Zm00025a023946 , Zm00025a029629
Brachypodium KQK03638 , KQJ86341 , KQK04230 , KQK04231
Barley HORVU5Hr1G023140.1 , HORVU5Hr1G023140.3 , HORVU5Hr1G023140.2 , HORVU3Hr1G035000.1 , HORVU3Hr1G035000.3 , HORVU3Hr1G035000.2 , HORVU3Hr1G035000.4 , HORVU3Hr1G045150.4 , HORVU3Hr1G045150.5 , HORVU3Hr1G045150.1 , HORVU3Hr1G045150.3
Wheat TraesCS3A02G193800 , TraesCS3D02G179300 , TraesCS3D02G179300 , TraesCS7D02G332100 , TraesCS3A02G172900 , TraesCS5A02G089200 , TraesCS3B02G203800 , TraesCS5D02G101300 , TraesCS3B02G221700 , TraesCS3D02G196200 , TraesCS5B02G095200
Populus -


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cDNA sequences
Sobic.003G115800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
2 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
3 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
4 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
5 Sobic.010G204300 expressed protein -
6 Sobic.001G054200 green ripe-like, putative, expressed -
7 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
8 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
9 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
10 Sobic.002G296300 expressed protein -
11 Sobic.006G141500 expressed protein -
12 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
13 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
14 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
15 Sobic.010G065400 X0001, putative, expressed -
16 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
17 Sobic.008G161000 protein kinase domain containing protein, expressed -
18 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
19 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
20 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1


Gene co-expression network
sample Sobic003G115800 Sobic003G115800 Sobic007G186300 Sobic007G186300 Sobic003G115800--Sobic007G186300 Sobic004G300900 Sobic004G300900 Sobic003G115800--Sobic004G300900 Sobic003G220600 Sobic003G220600 Sobic003G115800--Sobic003G220600 Sobic002G078400 Sobic002G078400 Sobic003G115800--Sobic002G078400 Sobic010G204300 Sobic010G204300 Sobic003G115800--Sobic010G204300 Sobic001G054200 Sobic001G054200 Sobic003G115800--Sobic001G054200 Sobic002G202300 Sobic002G202300 Sobic003G115800--Sobic002G202300 Sobic004G079100 Sobic004G079100 Sobic003G115800--Sobic004G079100 Sobic004G293700 Sobic004G293700 Sobic003G115800--Sobic004G293700 Sobic003G007500 Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic004G300900--Sobic002G078400 Sobic006G141500 Sobic006G141500 Sobic004G300900--Sobic006G141500 Sobic009G198500 Sobic009G198500 Sobic004G300900--Sobic009G198500 Sobic001G331900 Sobic001G331900 Sobic004G300900--Sobic001G331900 Sobic001G005900 Sobic001G005900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic008G058300 Sobic008G058300 Sobic004G300900--Sobic008G058300 Sobic004G300900--Sobic003G115800 Sobic001G445800 Sobic001G445800 Sobic004G300900--Sobic001G445800 Sobic003G220600--Sobic003G248600 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic003G220600--Sobic004G293700 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic008G161000 Sobic008G161000 Sobic010G204300--Sobic008G161000 Sobic010G204300--Sobic003G115800 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic002G296300 Sobic002G296300 Sobic010G204300--Sobic002G296300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic006G062800 Sobic006G062800 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic001G054200--Sobic003G115800 Sobic002G202300--Sobic003G253000 Sobic002G202300--Sobic003G220600 Sobic002G202300--Sobic006G141500 Sobic006G264300 Sobic006G264300 Sobic002G202300--Sobic006G264300 Sobic002G046100 Sobic002G046100 Sobic002G202300--Sobic002G046100 Sobic002G202300--Sobic003G115800 Sobic002G202300--Sobic010G204300 Sobic002G202300--Sobic006G062800 Sobic006G182100 Sobic006G182100 Sobic002G202300--Sobic006G182100 Sobic004G079100--Sobic004G293700 Sobic001G138300 Sobic001G138300 Sobic004G079100--Sobic001G138300 Sobic004G079100--Sobic001G054200 Sobic004G079100--Sobic010G083700 Sobic004G079100--Sobic003G115800 Sobic004G079100--Sobic007G186300 Sobic004G079100--Sobic009G246950 Sobic009G171700 Sobic009G171700 Sobic004G079100--Sobic009G171700 Sobic001G371300 Sobic001G371300 Sobic004G079100--Sobic001G371300 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G293700--Sobic004G079100 Sobic004G293700--Sobic010G083700 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600
Octagon: transcription factors


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