Gene annotation
Transcriptome id Sobic.004G196300.1
Synonym ATRAB-B1B, RABB1C, Sb04g024320, AT-RAB2, ATRABB1C, RAB2A, ATRAB2A, RAB-B1B
Functional annotation ras-related protein, putative, expressed
UniProt C5XWD1
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF545
NCBI CDD KOG0098; GTPase Rab2, small G protein superfamily
KEGG Orthology K07877; Ras-related protein Rab-2A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G17170 : RAB GTPase homolog B1C
RAP-DB (Rice) LOC_Os02g37420.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a011048 , Zm00025a021369 , Zm00025a031776 , Zm00025a056268
Brachypodium KQK00079 , KQJ83093
Barley HORVU6Hr1G051470.4 , HORVU6Hr1G051470.3 , HORVU6Hr1G051470.1 , HORVU6Hr1G051470.6 , HORVU6Hr1G051470.2 , HORVU6Hr1G051470.5
Wheat TraesCS2D02G331300 , TraesCS6D02G188500 , TraesCS2B02G350600 , TraesCS6B02G230400 , TraesCS6B02G230400 , TraesCS2A02G331600 , TraesCS6A02G207100
Populus PNS97093 , PNS97094


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cDNA sequences
Sobic.004G196300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
2 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
3 Sobic.001G309500 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
4 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
5 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
6 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
7 Sobic.006G182100 ORM1, putative, expressed -
8 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
9 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
10 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
11 Sobic.010G154700 - -
12 Sobic.001G048832 - -
13 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
14 Sobic.010G065400 X0001, putative, expressed -
15 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
16 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
17 Sobic.003G344600 BAG domain containing protein, expressed -
18 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
19 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
20 Sobic.001G445800 expressed protein -


Gene co-expression network
sample Sobic004G196300 Sobic004G196300 Sobic010G018400 Sobic010G018400 Sobic004G196300--Sobic010G018400 Sobic003G249800 Sobic003G249800 Sobic004G196300--Sobic003G249800 Sobic001G309500 Sobic001G309500 Sobic004G196300--Sobic001G309500 Sobic001G034700 Sobic001G034700 Sobic004G196300--Sobic001G034700 Sobic003G155400 Sobic003G155400 Sobic004G196300--Sobic003G155400 Sobic002G078400 Sobic002G078400 Sobic004G196300--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic004G196300--Sobic006G182100 Sobic004G066800 Sobic004G066800 Sobic004G196300--Sobic004G066800 Sobic010G153100 Sobic010G153100 Sobic004G196300--Sobic010G153100 Sobic008G129400 Sobic008G129400 Sobic010G018400--Sobic008G129400 Sobic003G368500 Sobic003G368500 Sobic010G018400--Sobic003G368500 Sobic010G018400--Sobic003G155400 Sobic009G176000 Sobic009G176000 Sobic010G018400--Sobic009G176000 Sobic007G051000 Sobic007G051000 Sobic010G018400--Sobic007G051000 Sobic010G154700 Sobic010G154700 Sobic010G018400--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic010G018400--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic010G018400--Sobic001G048832 Sobic001G445800 Sobic001G445800 Sobic010G018400--Sobic001G445800 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic001G309500--Sobic004G196300 Sobic001G309500--Sobic010G153100 Sobic001G309500--Sobic002G078400 Sobic003G217100 Sobic003G217100 Sobic001G309500--Sobic003G217100 Sobic001G526100 Sobic001G526100 Sobic001G309500--Sobic001G526100 Sobic002G090700 Sobic002G090700 Sobic001G309500--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic001G309500--Sobic008G132800 Sobic001G309500--Sobic004G066800 Sobic001G309500--Sobic003G155400 Sobic010G041600 Sobic010G041600 Sobic001G034700--Sobic010G041600 Sobic001G086300 Sobic001G086300 Sobic001G034700--Sobic001G086300 Sobic001G034700--Sobic001G048832 Sobic001G034700--Sobic009G176000 Sobic001G034700--Sobic007G051000 Sobic005G188100 Sobic005G188100 Sobic001G034700--Sobic005G188100 Sobic003G285800 Sobic003G285800 Sobic001G034700--Sobic003G285800 Sobic010G178200 Sobic010G178200 Sobic001G034700--Sobic010G178200 Sobic003G150000 Sobic003G150000 Sobic001G034700--Sobic003G150000 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic009G198500 Sobic009G198500 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic004G284500 Sobic004G284500 Sobic006G182100--Sobic004G284500 Sobic006G182100--Sobic009G033700 Sobic006G182100--Sobic002G046100 Sobic006G182100--Sobic010G018400 Sobic006G182100--Sobic004G196300 Sobic001G281400 Sobic001G281400 Sobic006G182100--Sobic001G281400 Sobic008G185400 Sobic008G185400 Sobic006G182100--Sobic008G185400 Sobic006G182100--Sobic003G368500 Sobic006G182100--Sobic001G445800 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic001G084900 Sobic001G084900 Sobic010G153100--Sobic001G084900 Sobic001G224400 Sobic001G224400 Sobic010G153100--Sobic001G224400 Sobic010G153100--Sobic003G155400 Sobic010G153100--Sobic001G445800 Sobic010G153100--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic010G153100--Sobic010G213400 Sobic007G115100 Sobic007G115100 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic006G141500 Sobic006G141500 Sobic010G153100--Sobic006G141500
Octagon: transcription factors


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