Gene annotation
Transcriptome id Sobic.004G248800.1
Synonym Sb04g028860, ATARLA1A, ARLA1A
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5XZB8
Pfam PF00071
Panther DB PTHR11711 PTHR11711:SF152
NCBI CDD KOG0075; GTP-binding ADP-ribosylation factor-like protein
KEGG Orthology K07955; ADP-ribosylation factor-like protein 8
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G37680 : ADP-ribosylation factor-like A1A
RAP-DB (Rice) LOC_Os02g49980.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a021927 , Zm00025a032656
Brachypodium KQK01593 , KQK01594
Barley HORVU6Hr1G073370.1 , HORVU6Hr1G073370.2 , HORVU6Hr1G073370.3 , HORVU6Hr1G073370.4 , HORVU6Hr1G073370.5 , HORVU6Hr1G073370.6 , HORVU6Hr1G073370.7
Wheat TraesCS6B02G324400 , TraesCS6B02G324400 , TraesCS6A02G293900 , TraesCS6D02G274800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G248800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G141500 expressed protein -
2 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
3 Sobic.010G039800 expressed protein -
4 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
5 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
6 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
7 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
8 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
9 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
10 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
11 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
12 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
13 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
14 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
15 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
16 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
17 Sobic.002G282400 expressed protein -
18 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
19 Sobic.007G059900 DUF292 domain containing protein, expressed -
20 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1


Gene co-expression network
sample Sobic004G248800 Sobic004G248800 Sobic006G141500 Sobic006G141500 Sobic004G248800--Sobic006G141500 Sobic001G529000 Sobic001G529000 Sobic004G248800--Sobic001G529000 Sobic010G039800 Sobic010G039800 Sobic004G248800--Sobic010G039800 Sobic003G253000 Sobic003G253000 Sobic004G248800--Sobic003G253000 Sobic004G293700 Sobic004G293700 Sobic004G248800--Sobic004G293700 Sobic008G161800 Sobic008G161800 Sobic004G248800--Sobic008G161800 Sobic002G263800 Sobic002G263800 Sobic004G248800--Sobic002G263800 Sobic002G218000 Sobic002G218000 Sobic004G248800--Sobic002G218000 Sobic003G249800 Sobic003G249800 Sobic004G248800--Sobic003G249800 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic006G141500--Sobic002G218000 Sobic004G300900 Sobic004G300900 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic006G141500--Sobic008G161800 Sobic006G141500--Sobic004G248800 Sobic002G046100 Sobic002G046100 Sobic006G141500--Sobic002G046100 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic001G529000--Sobic004G300900 Sobic010G039800--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic010G039800--Sobic001G529000 Sobic010G039800--Sobic008G161800 Sobic009G016201 Sobic009G016201 Sobic010G039800--Sobic009G016201 Sobic010G039800--Sobic002G218000 Sobic002G373800 Sobic002G373800 Sobic010G039800--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic010G039800--Sobic009G036900 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic004G293700--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic004G293700--Sobic001G054200 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic004G293700--Sobic006G141500 Sobic003G220600 Sobic003G220600 Sobic004G293700--Sobic003G220600 Sobic008G161800--Sobic002G263800 Sobic008G161800--Sobic006G141500 Sobic001G415500 Sobic001G415500 Sobic008G161800--Sobic001G415500 Sobic008G161800--Sobic003G253000 Sobic008G161800--Sobic006G108400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic008G161800--Sobic004G248800 Sobic002G263800--Sobic008G161800 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic010G173100 Sobic010G173100 Sobic002G263800--Sobic010G173100 Sobic002G263800--Sobic010G039800 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic002G218000--Sobic009G180000 Sobic002G218000--Sobic006G141500 Sobic002G218000--Sobic003G249800 Sobic002G218000--Sobic010G204500 Sobic005G111100 Sobic005G111100 Sobic002G218000--Sobic005G111100 Sobic001G066700 Sobic001G066700 Sobic002G218000--Sobic001G066700 Sobic010G106200 Sobic010G106200 Sobic002G218000--Sobic010G106200 Sobic002G218000--Sobic010G243200 Sobic002G330000 Sobic002G330000 Sobic002G218000--Sobic002G330000 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic003G249800--Sobic002G282400 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.