Gene annotation
Transcriptome id Sobic.003G253000.1
Synonym UBC36, UBC13B, Sb03g030840
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5XG33
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF159
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10580; UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16890 : ubiquitin-conjugating enzyme 36
RAP-DB (Rice) LOC_Os01g48280.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a036592 , Zm00025a028086 , Zm00025a038793 , Zm00025a044546
Brachypodium PNT64373 , KQK04916 , PNT72562 , PNT64359 , PNT64356 , PNT64365 , PNT64372 , PNT64370 , PNT64371 , PNT64376 , PNT64374 , PNT64378 , PNT64379 , KQJ89818 , PNT64364 , PNT64367 , PNT64366 , PNT64360 , PNT64363 , PNT64362 , PNT64368
Barley HORVU3Hr1G061790.4 , HORVU3Hr1G061790.1 , HORVU3Hr1G061790.2 , HORVU3Hr1G061790.3 , HORVU1Hr1G086610.1 , HORVU1Hr1G086610.2 , HORVU1Hr1G086480.1 , HORVU1Hr1G086480.2 , HORVU5Hr1G055360.1 , HORVU5Hr1G055360.2 , HORVU5Hr1G055360.3 , HORVU5Hr1G055360.4 , HORVU5Hr1G055360.5 , HORVU5Hr1G055360.6
Wheat TraesCS5D02G186100 , TraesCS3A02G271800 , TraesCS3B02G305500 , TraesCS1A02G392400 , TraesCS5B02G179700 , TraesCS5A02G181700 , TraesCS1D02G400600 , TraesCS3D02G271400
Populus -


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cDNA sequences
Sobic.003G253000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G141500 expressed protein -
2 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
3 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
5 Sobic.001G459200 MYB family transcription factor, putative, expressed -
6 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
7 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
8 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
9 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
10 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
11 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
13 Sobic.001G132100 expressed protein -
14 Sobic.001G048832 - -
15 Sobic.001G281400 expressed protein -
16 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
17 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
18 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
19 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
20 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4


Gene co-expression network
sample Sobic003G253000 Sobic003G253000 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic004G300900 Sobic004G300900 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic008G161800 Sobic008G161800 Sobic006G141500--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic006G141500--Sobic004G248800 Sobic006G141500--Sobic002G046100 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic003G130800 Sobic003G130800 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic004G049900--Sobic004G050000 Sobic001G415500 Sobic001G415500 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic002G267500--Sobic001G281400 Sobic002G267500--Sobic004G272800 Sobic002G267500--Sobic002G046100 Sobic002G267500--Sobic003G253000 Sobic010G149300 Sobic010G149300 Sobic002G267500--Sobic010G149300 Sobic002G267500--Sobic002G345300 Sobic002G267500--Sobic001G459200 Sobic009G143400 Sobic009G143400 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic004G272800--Sobic002G345300 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic001G459200--Sobic009G185800 Sobic001G459200--Sobic003G253000 Sobic001G499300 Sobic001G499300 Sobic001G459200--Sobic001G499300 Sobic004G055200 Sobic004G055200 Sobic001G459200--Sobic004G055200 Sobic001G459200--Sobic002G267500 Sobic001G459200--Sobic002G046100 Sobic001G459200--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic001G459200--Sobic003G181500 Sobic001G459200--Sobic003G130800 Sobic002G345300--Sobic002G046100 Sobic002G345300--Sobic003G350300 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G345300--Sobic002G267500 Sobic002G345300--Sobic003G253000 Sobic003G285800 Sobic003G285800 Sobic002G345300--Sobic003G285800 Sobic002G345300--Sobic004G272800 Sobic002G345300--Sobic010G149300 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic010G086200 Sobic010G086200 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900 Sobic009G185800--Sobic001G459200 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic009G185800--Sobic006G108400 Sobic009G185800--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic009G185800--Sobic004G330700 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500 Sobic006G108400--Sobic004G049900 Sobic006G108400--Sobic003G253000 Sobic006G108400--Sobic008G161800 Sobic006G108400--Sobic009G185800 Sobic006G108400--Sobic001G415500 Sobic006G108400--Sobic004G272800 Sobic006G108400--Sobic001G459200 Sobic006G108400--Sobic004G050000 Sobic006G108400--Sobic002G267500
Octagon: transcription factors


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