Gene annotation
Transcriptome id Sobic.003G220600.1
Synonym SNF7.1, Sb03g027900
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5XR17
Pfam PF03357
Panther DB PTHR22761 PTHR22761:SF8
NCBI CDD KOG1656; Protein involved in glucose derepression and pre-vacuolar endosome protein sorting
KEGG Orthology K12194; CHMP4, SNF7, charged multivesicular body protein 4
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT2G19830 : SNF7 family protein
RAP-DB (Rice) LOC_Os09g09480.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051362 , Zm00025a038510 , Zm00025a028740 , Zm00025a008657
Brachypodium KQJ89638 , KQK11044 , KQK11043
Barley HORVU5Hr1G052710.8 , HORVU5Hr1G052710.9 , HORVU5Hr1G052710.1 , HORVU5Hr1G052710.3 , HORVU5Hr1G052710.4 , HORVU5Hr1G052710.5 , HORVU5Hr1G052710.6 , HORVU5Hr1G052710.7 , HORVU5Hr1G052710.12 , HORVU5Hr1G052710.10 , HORVU5Hr1G052710.11
Wheat TraesCS5B02G168900 , TraesCS5D02G176200 , TraesCS5A02G171400
Populus -


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cDNA sequences
Sobic.003G220600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
2 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
5 Sobic.007G059900 DUF292 domain containing protein, expressed -
6 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
7 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
8 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
9 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
10 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
11 Sobic.007G045600 MSP domain containing protein, expressed -
12 Sobic.006G182100 ORM1, putative, expressed -
13 Sobic.002G296300 expressed protein -
14 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
15 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
16 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
19 Sobic.010G253800 expressed protein -
20 Sobic.005G176000 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic003G220600 Sobic003G220600 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic003G248600--Sobic003G220600 Sobic007G186300 Sobic007G186300 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic005G176000 Sobic005G176000 Sobic003G248600--Sobic005G176000 Sobic004G321900 Sobic004G321900 Sobic003G248600--Sobic004G321900 Sobic001G403700 Sobic001G403700 Sobic003G248600--Sobic001G403700 Sobic003G248600--Sobic009G146100 Sobic002G296300 Sobic002G296300 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic002G202300--Sobic003G253000 Sobic002G202300--Sobic003G220600 Sobic006G141500 Sobic006G141500 Sobic002G202300--Sobic006G141500 Sobic006G264300 Sobic006G264300 Sobic002G202300--Sobic006G264300 Sobic002G046100 Sobic002G046100 Sobic002G202300--Sobic002G046100 Sobic002G202300--Sobic003G115800 Sobic010G204300 Sobic010G204300 Sobic002G202300--Sobic010G204300 Sobic006G062800 Sobic006G062800 Sobic002G202300--Sobic006G062800 Sobic006G182100 Sobic006G182100 Sobic002G202300--Sobic006G182100 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic003G115800--Sobic007G186300 Sobic003G115800--Sobic004G300900 Sobic003G115800--Sobic003G220600 Sobic002G078400 Sobic002G078400 Sobic003G115800--Sobic002G078400 Sobic003G115800--Sobic010G204300 Sobic001G054200 Sobic001G054200 Sobic003G115800--Sobic001G054200 Sobic003G115800--Sobic002G202300 Sobic004G079100 Sobic004G079100 Sobic003G115800--Sobic004G079100 Sobic003G115800--Sobic004G293700 Sobic007G059900--Sobic003G220600 Sobic007G059900--Sobic006G062800 Sobic007G059900--Sobic010G204300 Sobic007G059900--Sobic007G186300 Sobic002G261900 Sobic002G261900 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic007G059900--Sobic004G293700 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G293700--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic004G293700--Sobic010G083700 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600 Sobic004G300900--Sobic002G078400 Sobic004G300900--Sobic006G141500 Sobic009G198500 Sobic009G198500 Sobic004G300900--Sobic009G198500 Sobic001G331900 Sobic001G331900 Sobic004G300900--Sobic001G331900 Sobic001G005900 Sobic001G005900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic008G058300 Sobic008G058300 Sobic004G300900--Sobic008G058300 Sobic004G300900--Sobic003G115800 Sobic001G445800 Sobic001G445800 Sobic004G300900--Sobic001G445800 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600 Sobic009G146100--Sobic010G253800 Sobic009G146100--Sobic003G253000 Sobic001G415500 Sobic001G415500 Sobic009G146100--Sobic001G415500 Sobic009G146100--Sobic001G433400 Sobic009G135600 Sobic009G135600 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic009G146100--Sobic007G186300 Sobic001G461900 Sobic001G461900 Sobic009G146100--Sobic001G461900 Sobic009G146100--Sobic007G045600
Octagon: transcription factors


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