Gene annotation
Transcriptome id Sobic.009G146100.1
Synonym Sb09g021090
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6P957
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology K12831; SF3B4, splicing factor 3B subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G10110 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os05g35274.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a037344 , Zm00025a026602 , Zm00025a043756
Brachypodium KQK06121
Barley HORVU1Hr1G065390.2 , HORVU1Hr1G065390.1 , HORVU1Hr1G065440.6 , HORVU1Hr1G065440.4 , HORVU1Hr1G065440.3
Wheat TraesCS1A02G267300 , TraesCS1B02G278200 , TraesCS1D02G267400
Populus -


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cDNA sequences
Sobic.009G146100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G253800 expressed protein -
2 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
3 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
4 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
6 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
7 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
8 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
9 Sobic.007G045600 MSP domain containing protein, expressed -
10 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
11 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
12 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
13 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.006G141500 expressed protein -
15 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
16 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
17 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.010G000900 spotted leaf 11, putative, expressed -
19 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.009G149300 expressed protein -


Gene co-expression network
sample Sobic009G146100 Sobic009G146100 Sobic010G253800 Sobic010G253800 Sobic009G146100--Sobic010G253800 Sobic003G253000 Sobic003G253000 Sobic009G146100--Sobic003G253000 Sobic001G415500 Sobic001G415500 Sobic009G146100--Sobic001G415500 Sobic001G433400 Sobic001G433400 Sobic009G146100--Sobic001G433400 Sobic009G135600 Sobic009G135600 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic007G186300 Sobic007G186300 Sobic009G146100--Sobic007G186300 Sobic001G461900 Sobic001G461900 Sobic009G146100--Sobic001G461900 Sobic007G045600 Sobic007G045600 Sobic009G146100--Sobic007G045600 Sobic010G253800--Sobic009G146100 Sobic004G293700 Sobic004G293700 Sobic010G253800--Sobic004G293700 Sobic010G083700 Sobic010G083700 Sobic010G253800--Sobic010G083700 Sobic002G247500 Sobic002G247500 Sobic010G253800--Sobic002G247500 Sobic002G352700 Sobic002G352700 Sobic010G253800--Sobic002G352700 Sobic001G007200 Sobic001G007200 Sobic010G253800--Sobic001G007200 Sobic006G263900 Sobic006G263900 Sobic010G253800--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic010G253800--Sobic009G171700 Sobic001G054200 Sobic001G054200 Sobic010G253800--Sobic001G054200 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic001G415500--Sobic001G007200 Sobic001G415500--Sobic008G161800 Sobic001G415500--Sobic003G253000 Sobic001G415500--Sobic009G146100 Sobic001G415500--Sobic006G108400 Sobic001G415500--Sobic006G141500 Sobic001G415500--Sobic004G049900 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic002G400000 Sobic002G400000 Sobic001G433400--Sobic002G400000 Sobic003G367451 Sobic003G367451 Sobic001G433400--Sobic003G367451 Sobic001G433400--Sobic009G146100 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic001G433400--Sobic003G220600 Sobic004G327300 Sobic004G327300 Sobic001G433400--Sobic004G327300 Sobic001G433400--Sobic007G186300 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200 Sobic002G263800 Sobic002G263800 Sobic008G161800--Sobic002G263800 Sobic008G161800--Sobic006G141500 Sobic008G161800--Sobic001G415500 Sobic008G161800--Sobic003G253000 Sobic008G161800--Sobic006G108400 Sobic007G095400 Sobic007G095400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic003G007500 Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000
Octagon: transcription factors


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