Gene annotation
Transcriptome id Sobic.003G007500.3,Sobic.003G007500.4
Synonym Sb03g000820, ckl3
Functional annotation CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed
UniProt A0A1B6Q0T2
Pfam PF00069
Panther DB PTHR11909 PTHR11909:SF97
NCBI CDD KOG1163; Casein kinase (serine/threonine/tyrosine protein kinase)
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G28880 : casein kinase I-like 3
RAP-DB (Rice) LOC_Os01g13060.2 : CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed
MaizeGDB (Corn) Zm00025a022821
Brachypodium KQK03426 , KQK03424 , KQK03425
Barley HORVU3Hr1G031560.7 , HORVU3Hr1G031560.5 , HORVU3Hr1G031560.1 , HORVU3Hr1G031560.8 , HORVU3Hr1G031560.9 , HORVU3Hr1G031560.14 , HORVU3Hr1G031560.15 , HORVU3Hr1G031560.16 , HORVU3Hr1G031560.10 , HORVU3Hr1G031560.11 , HORVU3Hr1G031560.12 , HORVU3Hr1G031560.13 , HORVU6Hr1G088800.4 , HORVU6Hr1G088800.5 , HORVU6Hr1G088800.6 , HORVU6Hr1G088800.1 , HORVU6Hr1G088800.2 , HORVU6Hr1G088800.3 , HORVU6Hr1G088800.9
Wheat TraesCS6D02G362500 , TraesCS3D02G162900 , TraesCS3D02G162900 , TraesCS3D02G162900 , TraesCS3B02G181900 , TraesCS3B02G181900 , TraesCS3B02G181900 , TraesCS3A02G155400 , TraesCS3A02G155400 , TraesCS6B02G415700 , TraesCS3A02G155400 , TraesCS3A02G155400 , TraesCS6A02G378000 , TraesCS6A02G378000 , TraesCS3A02G155400 , TraesCS6B02G415700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
2 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
3 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.001G078500 expressed protein -
5 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
6 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
7 Sobic.004G072800 expressed protein -
8 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
9 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
10 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
11 Sobic.010G253800 expressed protein -
12 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
13 Sobic.001G048700 TBC domain containing protein, expressed -
14 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
15 Sobic.001G054200 green ripe-like, putative, expressed -
16 Sobic.003G261400 DUF292 domain containing protein, expressed -
17 Sobic.002G296300 expressed protein -
18 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
19 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
20 Sobic.009G171700 SAG20, putative, expressed -


Gene co-expression network
sample Sobic003G007500 Sobic003G007500 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic010G083700 Sobic010G083700 Sobic003G007500--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic007G186300--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic007G186300--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic001G078500--Sobic010G168600 Sobic001G078500--Sobic009G171700 Sobic001G078500--Sobic003G007500 Sobic001G078500--Sobic006G263900 Sobic004G339200 Sobic004G339200 Sobic001G078500--Sobic004G339200 Sobic001G078500--Sobic010G083700 Sobic001G078500--Sobic009G246950 Sobic001G078500--Sobic007G186300 Sobic002G400000 Sobic002G400000 Sobic001G078500--Sobic002G400000 Sobic003G295400--Sobic003G007500 Sobic006G225600 Sobic006G225600 Sobic003G295400--Sobic006G225600 Sobic003G295400--Sobic010G253800 Sobic002G251700 Sobic002G251700 Sobic003G295400--Sobic002G251700 Sobic003G295400--Sobic001G078500 Sobic003G295400--Sobic001G051200 Sobic009G193400 Sobic009G193400 Sobic003G295400--Sobic009G193400 Sobic003G295400--Sobic010G168600 Sobic003G295400--Sobic009G171700 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G047400 Sobic001G047400 Sobic001G051200--Sobic001G047400 Sobic010G000900 Sobic010G000900 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic001G051200--Sobic002G400000 Sobic001G051200--Sobic010G168600 Sobic001G067900 Sobic001G067900 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic007G118000 Sobic007G118000 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic004G104900--Sobic002G256300 Sobic004G104900--Sobic010G083700 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic004G104900--Sobic003G007500 Sobic004G066200 Sobic004G066200 Sobic004G104900--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic004G104900--Sobic009G228700 Sobic004G104900--Sobic001G007200 Sobic004G104900--Sobic009G246950 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic010G205300 Sobic010G205300 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300
Octagon: transcription factors


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