Gene annotation
Transcriptome id Sobic.001G048700.1
Synonym PAM1, Sb01g004460
Functional annotation TBC domain containing protein, expressed
UniProt C5WW68
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF212
NCBI CDD KOG1102; Rab6 GTPase activator GAPCenA and related TBC domain proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15930 : plant adhesion molecule 1
RAP-DB (Rice) LOC_Os08g31840.3 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008642
Brachypodium PNT68084 , KQJ98257 , PNT68086 , KQJ98255 , PNT68090 , KQJ83335 , KQJ83334 , KQJ83337 , KQJ83336 , KQJ83339 , KQJ83338 , KQJ98256 , PNT68085 , KQJ98254 , PNT68087 , KQJ98252 , KQJ98253 , PNT68088 , PNT68089
Barley HORVU4Hr1G004750.5 , HORVU4Hr1G004750.2 , HORVU4Hr1G004750.3 , HORVU4Hr1G004750.1 , HORVU4Hr1G004750.6 , HORVU4Hr1G004750.4
Wheat TraesCS4A02G282500 , TraesCS4D02G028300 , TraesCS4B02G030800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
2 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.002G296300 expressed protein -
4 Sobic.002G376300 FYVE zinc finger family protein, expressed -
5 Sobic.009G228700 expressed protein -
6 Sobic.009G238800 expressed protein -
7 Sobic.004G072800 expressed protein -
8 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
9 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
10 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
11 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
12 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
13 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
14 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
15 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
16 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
17 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
18 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
19 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
20 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6


Gene co-expression network
sample Sobic001G048700 Sobic001G048700 Sobic003G007500 Sobic003G007500 Sobic001G048700--Sobic003G007500 Sobic006G148200 Sobic006G148200 Sobic001G048700--Sobic006G148200 Sobic002G296300 Sobic002G296300 Sobic001G048700--Sobic002G296300 Sobic002G376300 Sobic002G376300 Sobic001G048700--Sobic002G376300 Sobic009G228700 Sobic009G228700 Sobic001G048700--Sobic009G228700 Sobic009G238800 Sobic009G238800 Sobic001G048700--Sobic009G238800 Sobic004G072800 Sobic004G072800 Sobic001G048700--Sobic004G072800 Sobic001G323000 Sobic001G323000 Sobic001G048700--Sobic001G323000 Sobic007G118000 Sobic007G118000 Sobic001G048700--Sobic007G118000 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic010G083700 Sobic010G083700 Sobic003G007500--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic004G274400 Sobic004G274400 Sobic006G148200--Sobic004G274400 Sobic001G085100 Sobic001G085100 Sobic006G148200--Sobic001G085100 Sobic006G034000 Sobic006G034000 Sobic006G148200--Sobic006G034000 Sobic006G148200--Sobic001G323000 Sobic006G148200--Sobic009G228700 Sobic001G033500 Sobic001G033500 Sobic006G148200--Sobic001G033500 Sobic001G206900 Sobic001G206900 Sobic006G148200--Sobic001G206900 Sobic010G000900 Sobic010G000900 Sobic006G148200--Sobic010G000900 Sobic006G148200--Sobic001G048700 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic002G296300--Sobic007G186300 Sobic003G220600 Sobic003G220600 Sobic002G296300--Sobic003G220600 Sobic003G115800 Sobic003G115800 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic002G296300--Sobic003G007500 Sobic002G376300--Sobic009G238800 Sobic002G376300--Sobic001G048700 Sobic003G219500 Sobic003G219500 Sobic002G376300--Sobic003G219500 Sobic002G378200 Sobic002G378200 Sobic002G376300--Sobic002G378200 Sobic002G376300--Sobic007G118000 Sobic009G054700 Sobic009G054700 Sobic002G376300--Sobic009G054700 Sobic007G115900 Sobic007G115900 Sobic002G376300--Sobic007G115900 Sobic002G376300--Sobic006G148200 Sobic001G067900 Sobic001G067900 Sobic002G376300--Sobic001G067900 Sobic004G066200 Sobic004G066200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic001G091300 Sobic001G091300 Sobic009G228700--Sobic001G091300 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic010G080200 Sobic010G080200 Sobic009G238800--Sobic010G080200 Sobic006G232000 Sobic006G232000 Sobic009G238800--Sobic006G232000 Sobic006G217700 Sobic006G217700 Sobic009G238800--Sobic006G217700 Sobic009G238800--Sobic001G033500 Sobic009G238800--Sobic002G376300 Sobic009G238800--Sobic006G148200 Sobic009G238800--Sobic001G048700 Sobic009G238800--Sobic001G067900 Sobic009G238800--Sobic001G206900 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic001G323000--Sobic001G206900 Sobic001G323000--Sobic006G034000 Sobic001G323000--Sobic009G228700 Sobic001G057800 Sobic001G057800 Sobic001G323000--Sobic001G057800 Sobic001G323000--Sobic003G312200 Sobic001G323000--Sobic006G148200 Sobic001G323000--Sobic009G207000 Sobic001G323000--Sobic010G000900 Sobic001G323000--Sobic001G085100 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.