Gene annotation
Transcriptome id Sobic.004G072800.1
Synonym Sb04g006060
Functional annotation expressed protein
UniProt C5XX20
Pfam PF10280
Panther DB PTHR22890
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT3G01435 : Expressed protein
RAP-DB (Rice) LOC_Os02g09600.2 : expressed protein
MaizeGDB (Corn) Zm00025a040567 , Zm00025a019367 , Zm00025a034704
Brachypodium KQJ93757 , KQJ93758
Barley HORVU6Hr1G035250.5 , HORVU6Hr1G035250.4 , HORVU6Hr1G035250.1 , HORVU6Hr1G035250.3 , HORVU6Hr1G035250.2
Wheat TraesCS6D02G162100 , TraesCS6A02G173000 , TraesCS6B02G200600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
2 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
3 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
6 Sobic.001G522900 expressed protein -
7 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
8 Sobic.001G429400 wibg, putative, expressed K14294: WIBG, partner of Y14 and mago
9 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
10 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
11 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
12 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
13 Sobic.003G214300 expressed protein -
14 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
15 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
16 Sobic.007G167700 expressed protein -
17 Sobic.001G048700 TBC domain containing protein, expressed -
18 Sobic.006G242300 - -
19 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
20 Sobic.001G105100 neighbor of COX4, putative, expressed -


Gene co-expression network
sample Sobic004G072800 Sobic004G072800 Sobic001G067900 Sobic001G067900 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic007G118000 Sobic007G118000 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic002G281300 Sobic002G281300 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic003G350600--Sobic004G072800 Sobic001G512600 Sobic001G512600 Sobic003G350600--Sobic001G512600 Sobic003G350600--Sobic003G007500 Sobic008G142700 Sobic008G142700 Sobic003G350600--Sobic008G142700 Sobic003G226500 Sobic003G226500 Sobic003G350600--Sobic003G226500 Sobic001G427800 Sobic001G427800 Sobic003G350600--Sobic001G427800 Sobic009G232400 Sobic009G232400 Sobic003G350600--Sobic009G232400 Sobic001G061700 Sobic001G061700 Sobic003G350600--Sobic001G061700 Sobic003G350600--Sobic001G067900 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic010G083700 Sobic010G083700 Sobic003G007500--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic003G007500--Sobic002G281300 Sobic001G143500 Sobic001G143500 Sobic002G313500--Sobic001G143500 Sobic001G371200 Sobic001G371200 Sobic002G313500--Sobic001G371200 Sobic004G350100 Sobic004G350100 Sobic002G313500--Sobic004G350100 Sobic002G378200 Sobic002G378200 Sobic002G313500--Sobic002G378200 Sobic004G283000 Sobic004G283000 Sobic002G313500--Sobic004G283000 Sobic008G139700 Sobic008G139700 Sobic002G313500--Sobic008G139700 Sobic004G007300 Sobic004G007300 Sobic002G313500--Sobic004G007300 Sobic001G466700 Sobic001G466700 Sobic002G313500--Sobic001G466700 Sobic010G017800 Sobic010G017800 Sobic002G313500--Sobic010G017800 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic007G115900 Sobic007G115900 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic006G258900 Sobic006G258900 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic003G261400 Sobic003G261400 Sobic002G281300--Sobic003G261400 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300 Sobic001G429400--Sobic004G072800 Sobic003G024800 Sobic003G024800 Sobic001G429400--Sobic003G024800 Sobic010G211300 Sobic010G211300 Sobic001G429400--Sobic010G211300 Sobic001G429400--Sobic003G045400 Sobic003G043100 Sobic003G043100 Sobic001G429400--Sobic003G043100 Sobic001G429400--Sobic001G427800 Sobic009G140700 Sobic009G140700 Sobic001G429400--Sobic009G140700 Sobic002G272600 Sobic002G272600 Sobic001G429400--Sobic002G272600 Sobic004G263900 Sobic004G263900 Sobic001G429400--Sobic004G263900 Sobic001G467000 Sobic001G467000 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic003G045400--Sobic010G211300 Sobic003G045400--Sobic008G139700 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic003G045400--Sobic004G072800 Sobic003G045400--Sobic009G140700 Sobic003G045400--Sobic001G143500
Octagon: transcription factors


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