Gene annotation
Transcriptome id Sobic.001G067900.1
Synonym AP19
Functional annotation clathrin adaptor complex small chain domain containing protein, expressed
UniProt A0A1B6QHP4
Pfam PF01217
Panther DB PTHR11753 PTHR11753:SF16
NCBI CDD KOG0934; Clathrin adaptor complex, small subunit
KEGG Orthology K12394; AP-1 complex subunit sigma 1/2
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT2G17380 : associated protein 19
RAP-DB (Rice) LOC_Os03g57040.2 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008438 , Zm00025a016649 , Zm00025a010987
Brachypodium KQK12886 , KQK12885
Barley HORVU5Hr1G102770.1 , HORVU5Hr1G102770.2 , HORVU5Hr1G102930.4 , HORVU5Hr1G102930.2 , HORVU5Hr1G102930.3 , HORVU5Hr1G102930.1
Wheat TraesCS5D02G430000 , TraesCS5B02G423600
Populus -


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cDNA sequences
Sobic.001G067900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G105100 neighbor of COX4, putative, expressed -
2 Sobic.004G072800 expressed protein -
3 Sobic.006G257001 - -
4 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
5 Sobic.003G217100 Yip1 domain containing protein, expressed -
6 Sobic.006G034800 neighbor of COX4, putative, expressed -
7 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
8 Sobic.010G205300 secreted salivary protein, putative, expressed -
9 Sobic.001G237500 transporter family protein, putative, expressed -
10 Sobic.008G132800 expressed protein -
11 Sobic.003G261400 DUF292 domain containing protein, expressed -
12 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
13 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
14 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
15 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
16 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
17 Sobic.003G400100 leaf senescence related protein, putative, expressed -
18 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
19 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
20 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2


Gene co-expression network
sample Sobic001G067900 Sobic001G067900 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic001G105100--Sobic001G067900 Sobic001G105100--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic001G105100--Sobic008G132800 Sobic001G105100--Sobic006G257001 Sobic001G105100--Sobic006G034800 Sobic010G105600 Sobic010G105600 Sobic001G105100--Sobic010G105600 Sobic001G105100--Sobic001G237500 Sobic006G222400 Sobic006G222400 Sobic001G105100--Sobic006G222400 Sobic008G137600 Sobic008G137600 Sobic001G105100--Sobic008G137600 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic007G118000 Sobic007G118000 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic006G257001--Sobic001G067900 Sobic006G257001--Sobic006G034800 Sobic006G257001--Sobic001G105100 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic002G131900 Sobic002G131900 Sobic006G257001--Sobic002G131900 Sobic006G257001--Sobic010G105600 Sobic006G257001--Sobic003G217100 Sobic002G301300 Sobic002G301300 Sobic006G257001--Sobic002G301300 Sobic003G261400 Sobic003G261400 Sobic002G281300--Sobic003G261400 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic001G054200 Sobic001G054200 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic006G034800--Sobic006G257001 Sobic006G034800--Sobic001G105100 Sobic006G034800--Sobic001G067900 Sobic003G400100 Sobic003G400100 Sobic006G034800--Sobic003G400100 Sobic006G034800--Sobic001G041200 Sobic006G034800--Sobic010G205300 Sobic006G034800--Sobic010G105600 Sobic001G206900 Sobic001G206900 Sobic006G034800--Sobic001G206900 Sobic006G034800--Sobic002G131900 Sobic006G250900--Sobic002G281300 Sobic006G250900--Sobic001G067900 Sobic006G250900--Sobic003G261400 Sobic002G378200 Sobic002G378200 Sobic006G250900--Sobic002G378200 Sobic003G314100 Sobic003G314100 Sobic006G250900--Sobic003G314100 Sobic006G250900--Sobic003G007500 Sobic006G250900--Sobic001G054200 Sobic003G226500 Sobic003G226500 Sobic006G250900--Sobic003G226500 Sobic010G057900 Sobic010G057900 Sobic006G250900--Sobic010G057900 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic010G205300--Sobic001G067900 Sobic001G237500--Sobic010G105600 Sobic001G237500--Sobic006G257001 Sobic001G237500--Sobic001G105100 Sobic001G237500--Sobic001G067900 Sobic001G237500--Sobic003G217100 Sobic004G222600 Sobic004G222600 Sobic001G237500--Sobic004G222600 Sobic001G237500--Sobic002G131900 Sobic003G052400 Sobic003G052400 Sobic001G237500--Sobic003G052400 Sobic004G132300 Sobic004G132300 Sobic001G237500--Sobic004G132300
Octagon: transcription factors


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