Gene annotation
Transcriptome id Sobic.010G105600.1
Synonym ALY4, Sb10g009240
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Z804
Pfam PF00076
Panther DB PTHR19965 PTHR19965:SF27
NCBI CDD KOG0533; RRM motif-containing protein
KEGG Orthology K12881; THOC4, THO complex subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G37720 : ALWAYS EARLY 4
RAP-DB (Rice) LOC_Os06g14470.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042732
Brachypodium KQK18700 , KQK18699 , PNT76106
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G105600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G237500 transporter family protein, putative, expressed -
2 Sobic.001G105100 neighbor of COX4, putative, expressed -
3 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
4 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
5 Sobic.003G400100 leaf senescence related protein, putative, expressed -
6 Sobic.006G257001 - -
7 Sobic.002G272600 TBC domain containing protein, expressed -
8 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.006G034800 neighbor of COX4, putative, expressed -
10 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
11 Sobic.001G080000 expressed protein -
12 Sobic.002G131900 expressed protein -
13 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
15 Sobic.004G072800 expressed protein -
16 Sobic.006G183000 RING zinc finger protein, putative, expressed -
17 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
18 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
20 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic010G105600 Sobic010G105600 Sobic001G237500 Sobic001G237500 Sobic010G105600--Sobic001G237500 Sobic001G105100 Sobic001G105100 Sobic010G105600--Sobic001G105100 Sobic003G405700 Sobic003G405700 Sobic010G105600--Sobic003G405700 Sobic001G067900 Sobic001G067900 Sobic010G105600--Sobic001G067900 Sobic003G400100 Sobic003G400100 Sobic010G105600--Sobic003G400100 Sobic006G257001 Sobic006G257001 Sobic010G105600--Sobic006G257001 Sobic002G272600 Sobic002G272600 Sobic010G105600--Sobic002G272600 Sobic001G061700 Sobic001G061700 Sobic010G105600--Sobic001G061700 Sobic006G034800 Sobic006G034800 Sobic010G105600--Sobic006G034800 Sobic001G237500--Sobic010G105600 Sobic001G237500--Sobic006G257001 Sobic001G237500--Sobic001G105100 Sobic001G237500--Sobic001G067900 Sobic003G217100 Sobic003G217100 Sobic001G237500--Sobic003G217100 Sobic004G222600 Sobic004G222600 Sobic001G237500--Sobic004G222600 Sobic002G131900 Sobic002G131900 Sobic001G237500--Sobic002G131900 Sobic003G052400 Sobic003G052400 Sobic001G237500--Sobic003G052400 Sobic004G132300 Sobic004G132300 Sobic001G237500--Sobic004G132300 Sobic001G105100--Sobic001G067900 Sobic001G105100--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic001G105100--Sobic008G132800 Sobic001G105100--Sobic006G257001 Sobic001G105100--Sobic006G034800 Sobic001G105100--Sobic010G105600 Sobic001G105100--Sobic001G237500 Sobic006G222400 Sobic006G222400 Sobic001G105100--Sobic006G222400 Sobic008G137600 Sobic008G137600 Sobic001G105100--Sobic008G137600 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic006G183000 Sobic006G183000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic003G405700--Sobic002G272600 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic001G067900--Sobic003G217100 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G067900--Sobic001G237500 Sobic003G400100--Sobic006G034800 Sobic001G261456 Sobic001G261456 Sobic003G400100--Sobic001G261456 Sobic003G400100--Sobic002G131900 Sobic002G313500 Sobic002G313500 Sobic003G400100--Sobic002G313500 Sobic003G400100--Sobic010G105600 Sobic003G400100--Sobic001G067900 Sobic009G226400 Sobic009G226400 Sobic003G400100--Sobic009G226400 Sobic001G371200 Sobic001G371200 Sobic003G400100--Sobic001G371200 Sobic010G017800 Sobic010G017800 Sobic003G400100--Sobic010G017800 Sobic006G257001--Sobic001G067900 Sobic006G257001--Sobic006G034800 Sobic006G257001--Sobic001G105100 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic006G257001--Sobic002G131900 Sobic006G257001--Sobic010G105600 Sobic006G257001--Sobic003G217100 Sobic002G301300 Sobic002G301300 Sobic006G257001--Sobic002G301300 Sobic002G272600--Sobic001G061700 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic002G272600--Sobic003G405700 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic003G038600 Sobic003G038600 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic010G219100 Sobic010G219100 Sobic002G272600--Sobic010G219100 Sobic001G061700--Sobic004G059000 Sobic001G061700--Sobic002G272600 Sobic001G061700--Sobic003G350600 Sobic001G061700--Sobic007G205000 Sobic002G365100 Sobic002G365100 Sobic001G061700--Sobic002G365100 Sobic001G061700--Sobic010G105600 Sobic003G273500 Sobic003G273500 Sobic001G061700--Sobic003G273500 Sobic001G028400 Sobic001G028400 Sobic001G061700--Sobic001G028400 Sobic002G378200 Sobic002G378200 Sobic001G061700--Sobic002G378200 Sobic006G034800--Sobic006G257001 Sobic006G034800--Sobic001G105100 Sobic006G034800--Sobic001G067900 Sobic006G034800--Sobic003G400100 Sobic006G034800--Sobic001G041200 Sobic006G034800--Sobic010G205300 Sobic006G034800--Sobic010G105600 Sobic001G206900 Sobic001G206900 Sobic006G034800--Sobic001G206900 Sobic006G034800--Sobic002G131900
Octagon: transcription factors


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