Gene annotation
Transcriptome id Sobic.002G040700.1
Synonym Sb02g003490
Functional annotation tetratricopeptide repeat, putative, expressed
UniProt C5XA81
Pfam PF00515
Panther DB PTHR10516 PTHR10516:SF322
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G21990 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g06710.1 : tetratricopeptide repeat, putative, expressed
MaizeGDB (Corn) Zm00025a045062
Brachypodium KQK20830 , PNT77039 , KQK06536
Barley HORVU2Hr1G055640.8 , HORVU2Hr1G055640.9 , HORVU2Hr1G055640.4 , HORVU2Hr1G055640.5 , HORVU2Hr1G055640.6 , HORVU2Hr1G055640.7 , HORVU2Hr1G055640.2 , HORVU2Hr1G055640.3 , HORVU2Hr1G055640.14 , HORVU2Hr1G055640.15 , HORVU2Hr1G055640.12 , HORVU2Hr1G055640.13 , HORVU2Hr1G055640.10 , HORVU2Hr1G055640.11
Wheat TraesCS2B02G268900 , TraesCS2B02G268900 , TraesCS2D02G250000 , TraesCS2A02G248300
Populus -


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cDNA sequences
Sobic.002G040700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512400 expressed protein -
2 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
3 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
4 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
5 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
6 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
8 Sobic.001G048700 TBC domain containing protein, expressed -
9 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
10 Sobic.006G225300 expressed protein -
11 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
14 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
15 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
16 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
17 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
18 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
20 Sobic.006G103100 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase


Gene co-expression network
sample Sobic002G040700 Sobic002G040700 Sobic001G512400 Sobic001G512400 Sobic002G040700--Sobic001G512400 Sobic001G439600 Sobic001G439600 Sobic002G040700--Sobic001G439600 Sobic008G165000 Sobic008G165000 Sobic002G040700--Sobic008G165000 Sobic001G105500 Sobic001G105500 Sobic002G040700--Sobic001G105500 Sobic007G118000 Sobic007G118000 Sobic002G040700--Sobic007G118000 Sobic004G010900 Sobic004G010900 Sobic002G040700--Sobic004G010900 Sobic003G116600 Sobic003G116600 Sobic002G040700--Sobic003G116600 Sobic001G048700 Sobic001G048700 Sobic002G040700--Sobic001G048700 Sobic001G367000 Sobic001G367000 Sobic002G040700--Sobic001G367000 Sobic001G313500 Sobic001G313500 Sobic001G512400--Sobic001G313500 Sobic009G135600 Sobic009G135600 Sobic001G512400--Sobic009G135600 Sobic001G512400--Sobic002G040700 Sobic006G263900 Sobic006G263900 Sobic001G512400--Sobic006G263900 Sobic001G421400 Sobic001G421400 Sobic001G512400--Sobic001G421400 Sobic001G512400--Sobic008G165000 Sobic001G161900 Sobic001G161900 Sobic001G512400--Sobic001G161900 Sobic003G349300 Sobic003G349300 Sobic001G512400--Sobic003G349300 Sobic010G188200 Sobic010G188200 Sobic001G512400--Sobic010G188200 Sobic003G124800 Sobic003G124800 Sobic001G439600--Sobic003G124800 Sobic002G129000 Sobic002G129000 Sobic001G439600--Sobic002G129000 Sobic010G083700 Sobic010G083700 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G136900 Sobic001G136900 Sobic001G439600--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic001G439600--Sobic001G054200 Sobic010G168600 Sobic010G168600 Sobic001G439600--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic001G439600--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic001G439600--Sobic001G529000 Sobic010G243400 Sobic010G243400 Sobic008G165000--Sobic010G243400 Sobic006G254600 Sobic006G254600 Sobic008G165000--Sobic006G254600 Sobic001G489700 Sobic001G489700 Sobic008G165000--Sobic001G489700 Sobic002G378200 Sobic002G378200 Sobic008G165000--Sobic002G378200 Sobic001G085500 Sobic001G085500 Sobic008G165000--Sobic001G085500 Sobic004G094300 Sobic004G094300 Sobic008G165000--Sobic004G094300 Sobic008G165000--Sobic002G040700 Sobic008G165000--Sobic001G512400 Sobic001G522900 Sobic001G522900 Sobic008G165000--Sobic001G522900 Sobic001G031600 Sobic001G031600 Sobic001G105500--Sobic001G031600 Sobic009G219000 Sobic009G219000 Sobic001G105500--Sobic009G219000 Sobic009G193400 Sobic009G193400 Sobic001G105500--Sobic009G193400 Sobic001G105500--Sobic002G040700 Sobic001G391600 Sobic001G391600 Sobic001G105500--Sobic001G391600 Sobic001G541100 Sobic001G541100 Sobic001G105500--Sobic001G541100 Sobic006G225600 Sobic006G225600 Sobic001G105500--Sobic006G225600 Sobic009G050700 Sobic009G050700 Sobic001G105500--Sobic009G050700 Sobic001G323000 Sobic001G323000 Sobic001G105500--Sobic001G323000 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic002G281300 Sobic002G281300 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic001G206900 Sobic001G206900 Sobic004G010900--Sobic001G206900 Sobic001G458700 Sobic001G458700 Sobic004G010900--Sobic001G458700 Sobic004G082900 Sobic004G082900 Sobic004G010900--Sobic004G082900 Sobic006G252200 Sobic006G252200 Sobic004G010900--Sobic006G252200 Sobic010G205300 Sobic010G205300 Sobic004G010900--Sobic010G205300 Sobic003G261400 Sobic003G261400 Sobic004G010900--Sobic003G261400 Sobic001G338400 Sobic001G338400 Sobic004G010900--Sobic001G338400 Sobic001G283200 Sobic001G283200 Sobic004G010900--Sobic001G283200 Sobic004G010900--Sobic003G349300 Sobic002G090700 Sobic002G090700 Sobic003G116600--Sobic002G090700 Sobic010G007400 Sobic010G007400 Sobic003G116600--Sobic010G007400 Sobic005G184200 Sobic005G184200 Sobic003G116600--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic003G116600--Sobic004G159000 Sobic004G339300 Sobic004G339300 Sobic003G116600--Sobic004G339300 Sobic003G116600--Sobic001G367000 Sobic004G202100 Sobic004G202100 Sobic003G116600--Sobic004G202100 Sobic001G309500 Sobic001G309500 Sobic003G116600--Sobic001G309500 Sobic002G401700 Sobic002G401700 Sobic003G116600--Sobic002G401700 Sobic003G007500 Sobic003G007500 Sobic001G048700--Sobic003G007500 Sobic006G148200 Sobic006G148200 Sobic001G048700--Sobic006G148200 Sobic002G296300 Sobic002G296300 Sobic001G048700--Sobic002G296300 Sobic002G376300 Sobic002G376300 Sobic001G048700--Sobic002G376300 Sobic009G228700 Sobic009G228700 Sobic001G048700--Sobic009G228700 Sobic009G238800 Sobic009G238800 Sobic001G048700--Sobic009G238800 Sobic001G048700--Sobic004G072800 Sobic001G048700--Sobic001G323000 Sobic001G048700--Sobic007G118000 Sobic001G367000--Sobic001G529000 Sobic004G224800 Sobic004G224800 Sobic001G367000--Sobic004G224800 Sobic006G222400 Sobic006G222400 Sobic001G367000--Sobic006G222400 Sobic001G367000--Sobic002G090700 Sobic003G362400 Sobic003G362400 Sobic001G367000--Sobic003G362400 Sobic001G367000--Sobic001G054200 Sobic001G126200 Sobic001G126200 Sobic001G367000--Sobic001G126200 Sobic001G367000--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G367000--Sobic010G065400
Octagon: transcription factors


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