Gene annotation
Transcriptome id Sobic.001G439600.1
Synonym MBP1, MCB1, ATMCB1, Sb01g041330, RPN10
Functional annotation 26S proteasome non-ATPase regulatory subunit 4, putative, expressed
UniProt C5WR06
Pfam PF02809 PF13519
Panther DB PTHR10223
NCBI CDD KOG2884; 26S proteasome regulatory complex, subunit RPN10/PSMD4
KEGG Orthology K03029; PSMD4, 26S proteasome regulatory subunit N10
Gene Ontology GO:0008540; proteasome regulatory particle, base subcomplex GO:0006511ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT4G38630 : regulatory particle non-ATPase 10
RAP-DB (Rice) LOC_Os03g13970.1 : 26S proteasome non-ATPase regulatory subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a030406 , Zm00025a052904 , Zm00025a001530
Brachypodium KQK22602
Barley HORVU4Hr1G063820.3 , HORVU4Hr1G063820.2 , HORVU4Hr1G063820.1 , HORVU4Hr1G063820.7 , HORVU4Hr1G063820.6 , HORVU4Hr1G063820.4
Wheat TraesCS4D02G227900 , TraesCS4D02G227900 , TraesCS4B02G227200 , TraesCS4B02G227200 , TraesCS4B02G227200 , TraesCS4A02G071300 , TraesCS4A02G071300
Populus -


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cDNA sequences
Sobic.001G439600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
2 Sobic.002G129000 RING zinc finger protein, putative, expressed -
3 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
4 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
6 Sobic.001G054200 green ripe-like, putative, expressed -
7 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
8 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
10 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
11 Sobic.006G225300 expressed protein -
12 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
14 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
15 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
16 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
18 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
19 Sobic.006G183000 RING zinc finger protein, putative, expressed -
20 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A


Gene co-expression network
sample Sobic001G439600 Sobic001G439600 Sobic003G124800 Sobic003G124800 Sobic001G439600--Sobic003G124800 Sobic002G129000 Sobic002G129000 Sobic001G439600--Sobic002G129000 Sobic010G083700 Sobic010G083700 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G136900 Sobic001G136900 Sobic001G439600--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic001G439600--Sobic001G054200 Sobic010G168600 Sobic010G168600 Sobic001G439600--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic001G439600--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic001G439600--Sobic001G529000 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic006G183000 Sobic006G183000 Sobic002G129000--Sobic006G183000 Sobic002G129000--Sobic001G439600 Sobic009G050700 Sobic009G050700 Sobic002G129000--Sobic009G050700 Sobic002G129000--Sobic001G294900 Sobic002G400000 Sobic002G400000 Sobic002G129000--Sobic002G400000 Sobic002G129000--Sobic010G168600 Sobic002G129000--Sobic001G136900 Sobic006G263900 Sobic006G263900 Sobic002G129000--Sobic006G263900 Sobic003G405700 Sobic003G405700 Sobic002G129000--Sobic003G405700 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic008G137600 Sobic008G137600 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G294900--Sobic001G439600 Sobic001G294900--Sobic006G183000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic006G109700 Sobic006G109700 Sobic001G294900--Sobic006G109700 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic001G136900--Sobic010G083700 Sobic001G136900--Sobic006G263900 Sobic001G136900--Sobic002G129000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic004G104900 Sobic004G104900 Sobic010G168600--Sobic004G104900 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic002G256300--Sobic001G439600 Sobic002G256300--Sobic006G263900 Sobic002G256300--Sobic009G171700 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900
Octagon: transcription factors


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