Gene annotation
Transcriptome id Sobic.004G224800.2,Sobic.004G224800.1
Synonym PEX4, UBC21, Sb04g026910
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A194YR37
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF145
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10689; peroxin-4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G25760 : peroxin4
RAP-DB (Rice) LOC_Os02g42314.2 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a021038 , Zm00025a032081 , Zm00025a032083
Brachypodium -
Barley HORVU5Hr1G088270.8 , HORVU5Hr1G088270.1 , HORVU5Hr1G088270.2 , HORVU5Hr1G088270.3 , HORVU5Hr1G088270.4 , HORVU5Hr1G088270.5 , HORVU5Hr1G088270.6 , HORVU5Hr1G088270.7
Wheat TraesCS5B02G360000
Populus -


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cDNA sequences
Sobic.004G224800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
2 Sobic.004G334800 vacuolar protein sorting 55 family protein, putative, expressed -
3 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
4 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
5 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
6 Sobic.010G039800 expressed protein -
7 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
8 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
9 Sobic.001G054200 green ripe-like, putative, expressed -
10 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
12 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
13 Sobic.001G143300 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
14 Sobic.008G132800 expressed protein -
15 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
16 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
17 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
18 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.009G045800 bifunctional protein folD, putative, expressed -
20 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4


Gene co-expression network
sample Sobic004G224800 Sobic004G224800 Sobic003G124800 Sobic003G124800 Sobic004G224800--Sobic003G124800 Sobic004G334800 Sobic004G334800 Sobic004G224800--Sobic004G334800 Sobic001G529000 Sobic001G529000 Sobic004G224800--Sobic001G529000 Sobic004G066800 Sobic004G066800 Sobic004G224800--Sobic004G066800 Sobic001G439600 Sobic001G439600 Sobic004G224800--Sobic001G439600 Sobic010G039800 Sobic010G039800 Sobic004G224800--Sobic010G039800 Sobic001G367000 Sobic001G367000 Sobic004G224800--Sobic001G367000 Sobic001G126200 Sobic001G126200 Sobic004G224800--Sobic001G126200 Sobic001G054200 Sobic001G054200 Sobic004G224800--Sobic001G054200 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic003G124800--Sobic004G066800 Sobic004G334800--Sobic004G224800 Sobic004G334800--Sobic004G066800 Sobic004G196300 Sobic004G196300 Sobic004G334800--Sobic004G196300 Sobic007G114200 Sobic007G114200 Sobic004G334800--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic004G334800--Sobic007G019100 Sobic002G090700 Sobic002G090700 Sobic004G334800--Sobic002G090700 Sobic004G327300 Sobic004G327300 Sobic004G334800--Sobic004G327300 Sobic002G078400 Sobic002G078400 Sobic004G334800--Sobic002G078400 Sobic001G403700 Sobic001G403700 Sobic004G334800--Sobic001G403700 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic001G439600--Sobic003G124800 Sobic002G129000 Sobic002G129000 Sobic001G439600--Sobic002G129000 Sobic010G083700 Sobic010G083700 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G136900 Sobic001G136900 Sobic001G439600--Sobic001G136900 Sobic001G439600--Sobic001G054200 Sobic010G168600 Sobic010G168600 Sobic001G439600--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic001G439600--Sobic002G256300 Sobic001G439600--Sobic001G529000 Sobic002G263800 Sobic002G263800 Sobic010G039800--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic010G039800--Sobic001G529000 Sobic008G161800 Sobic008G161800 Sobic010G039800--Sobic008G161800 Sobic009G016201 Sobic009G016201 Sobic010G039800--Sobic009G016201 Sobic002G218000 Sobic002G218000 Sobic010G039800--Sobic002G218000 Sobic002G373800 Sobic002G373800 Sobic010G039800--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic010G039800--Sobic009G036900 Sobic001G367000--Sobic001G529000 Sobic001G367000--Sobic004G224800 Sobic006G222400 Sobic006G222400 Sobic001G367000--Sobic006G222400 Sobic001G367000--Sobic002G090700 Sobic001G367000--Sobic003G362400 Sobic001G367000--Sobic001G054200 Sobic001G367000--Sobic001G126200 Sobic001G367000--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G367000--Sobic010G065400 Sobic001G126200--Sobic006G222400 Sobic001G126200--Sobic004G224800 Sobic006G094600 Sobic006G094600 Sobic001G126200--Sobic006G094600 Sobic003G131300 Sobic003G131300 Sobic001G126200--Sobic003G131300 Sobic001G285300 Sobic001G285300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800
Octagon: transcription factors


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