Gene annotation
Transcriptome id Sobic.004G334800.1
Synonym Sb04g036300
Functional annotation vacuolar protein sorting 55 family protein, putative, expressed
UniProt C5XV35
Pfam PF04133
Panther DB PTHR12050 PTHR12050:SF1
NCBI CDD KOG2174; Leptin receptor gene-related protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32410 : Vacuolar protein sorting 55 (VPS55) family protein
RAP-DB (Rice) LOC_Os02g55980.1 : vacuolar protein sorting 55 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032894
Brachypodium KQK01204
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
2 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
3 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
4 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
5 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
6 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
7 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
8 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
9 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
10 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
11 Sobic.006G182100 ORM1, putative, expressed -
12 Sobic.001G048832 - -
13 Sobic.008G132800 expressed protein -
14 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
15 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
16 Sobic.010G065400 X0001, putative, expressed -
17 Sobic.009G045800 bifunctional protein folD, putative, expressed -
18 Sobic.010G154700 - -
19 Sobic.001G132100 expressed protein -
20 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -


Gene co-expression network
sample Sobic004G334800 Sobic004G334800 Sobic004G224800 Sobic004G224800 Sobic004G334800--Sobic004G224800 Sobic004G066800 Sobic004G066800 Sobic004G334800--Sobic004G066800 Sobic004G196300 Sobic004G196300 Sobic004G334800--Sobic004G196300 Sobic007G114200 Sobic007G114200 Sobic004G334800--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic004G334800--Sobic007G019100 Sobic002G090700 Sobic002G090700 Sobic004G334800--Sobic002G090700 Sobic004G327300 Sobic004G327300 Sobic004G334800--Sobic004G327300 Sobic002G078400 Sobic002G078400 Sobic004G334800--Sobic002G078400 Sobic001G403700 Sobic001G403700 Sobic004G334800--Sobic001G403700 Sobic003G124800 Sobic003G124800 Sobic004G224800--Sobic003G124800 Sobic004G224800--Sobic004G334800 Sobic001G529000 Sobic001G529000 Sobic004G224800--Sobic001G529000 Sobic004G224800--Sobic004G066800 Sobic001G439600 Sobic001G439600 Sobic004G224800--Sobic001G439600 Sobic010G039800 Sobic010G039800 Sobic004G224800--Sobic010G039800 Sobic001G367000 Sobic001G367000 Sobic004G224800--Sobic001G367000 Sobic001G126200 Sobic001G126200 Sobic004G224800--Sobic001G126200 Sobic001G054200 Sobic001G054200 Sobic004G224800--Sobic001G054200 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic010G018400 Sobic010G018400 Sobic004G196300--Sobic010G018400 Sobic003G249800 Sobic003G249800 Sobic004G196300--Sobic003G249800 Sobic001G309500 Sobic001G309500 Sobic004G196300--Sobic001G309500 Sobic001G034700 Sobic001G034700 Sobic004G196300--Sobic001G034700 Sobic004G196300--Sobic003G155400 Sobic004G196300--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic004G196300--Sobic006G182100 Sobic004G196300--Sobic004G066800 Sobic010G153100 Sobic010G153100 Sobic004G196300--Sobic010G153100 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic003G323600 Sobic003G323600 Sobic007G019100--Sobic003G323600 Sobic009G119900 Sobic009G119900 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic004G170400 Sobic004G170400 Sobic007G019100--Sobic004G170400 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic007G019100--Sobic001G342200 Sobic003G116600 Sobic003G116600 Sobic002G090700--Sobic003G116600 Sobic010G007400 Sobic010G007400 Sobic002G090700--Sobic010G007400 Sobic003G217100 Sobic003G217100 Sobic002G090700--Sobic003G217100 Sobic004G159000 Sobic004G159000 Sobic002G090700--Sobic004G159000 Sobic003G152900 Sobic003G152900 Sobic002G090700--Sobic003G152900 Sobic002G090700--Sobic004G066800 Sobic002G090700--Sobic001G309500 Sobic002G090700--Sobic002G078400 Sobic001G031900 Sobic001G031900 Sobic002G090700--Sobic001G031900 Sobic004G327300--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G327300--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G327300--Sobic007G096700 Sobic002G400000 Sobic002G400000 Sobic004G327300--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic009G198500 Sobic009G198500 Sobic004G327300--Sobic009G198500 Sobic004G327300--Sobic007G114200 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic001G403700--Sobic002G078400 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic001G403700--Sobic008G132800 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400
Octagon: transcription factors


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