Gene annotation
Transcriptome id Sobic.001G143300.1
Synonym RAB-F2B, ARA-7, ATRAB5B, Sb01g012480, ATRAB-F2B, RABF2B, ATRABF2B, ARA7
Functional annotation ras-related protein, putative, expressed
UniProt C5WQB6
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF570
NCBI CDD KOG0092; GTPase Rab5/YPT51 and related small G protein superfamily GTPases
KEGG Orthology K07889; Ras-related protein Rab-5C
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G19640 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os12g43550.2 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a017157 , Zm00025a009187 , Zm00025a004832
Brachypodium KQK13854 , KQJ85683 , KQJ85682 , KQK13855
Barley HORVU4Hr1G002980.14 , HORVU4Hr1G002980.11 , HORVU4Hr1G002980.10 , HORVU4Hr1G002980.13 , HORVU4Hr1G002980.12 , HORVU4Hr1G002980.9 , HORVU4Hr1G002980.8 , HORVU4Hr1G002980.1 , HORVU4Hr1G002980.3 , HORVU4Hr1G002980.2 , HORVU4Hr1G002980.5 , HORVU4Hr1G002980.4 , HORVU4Hr1G002980.7 , HORVU4Hr1G002980.6 , HORVU5Hr1G002970.5 , HORVU5Hr1G002970.4 , HORVU5Hr1G002970.6 , HORVU5Hr1G002970.1 , HORVU5Hr1G002970.3 , HORVU5Hr1G002970.2
Wheat TraesCS4A02G294600 , TraesCS4D02G017300 , TraesCS4D02G017300 , TraesCS5B02G014400 , TraesCS4B02G019100 , TraesCS4B02G019100 , TraesCS5D02G022200 , TraesCS5D02G022200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G143300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
2 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
3 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
4 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
5 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
6 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
7 Sobic.007G045600 MSP domain containing protein, expressed -
8 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
9 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
10 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
11 Sobic.003G261400 DUF292 domain containing protein, expressed -
12 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
13 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
14 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
15 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
16 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
17 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
19 Sobic.003G386100 selenoprotein precursor, putative, expressed -
20 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4


Gene co-expression network
sample Sobic001G143300 Sobic001G143300 Sobic006G232200 Sobic006G232200 Sobic001G143300--Sobic006G232200 Sobic007G096700 Sobic007G096700 Sobic001G143300--Sobic007G096700 Sobic003G124800 Sobic003G124800 Sobic001G143300--Sobic003G124800 Sobic004G224800 Sobic004G224800 Sobic001G143300--Sobic004G224800 Sobic009G198500 Sobic009G198500 Sobic001G143300--Sobic009G198500 Sobic010G083700 Sobic010G083700 Sobic001G143300--Sobic010G083700 Sobic007G045600 Sobic007G045600 Sobic001G143300--Sobic007G045600 Sobic003G007500 Sobic003G007500 Sobic001G143300--Sobic003G007500 Sobic004G130900 Sobic004G130900 Sobic001G143300--Sobic004G130900 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic007G096700--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic001G501200 Sobic001G501200 Sobic007G096700--Sobic001G501200 Sobic001G005900 Sobic001G005900 Sobic007G096700--Sobic001G005900 Sobic002G400000 Sobic002G400000 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic004G300900 Sobic004G300900 Sobic007G096700--Sobic004G300900 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic004G224800--Sobic003G124800 Sobic004G334800 Sobic004G334800 Sobic004G224800--Sobic004G334800 Sobic004G224800--Sobic001G529000 Sobic004G224800--Sobic004G066800 Sobic004G224800--Sobic001G439600 Sobic010G039800 Sobic010G039800 Sobic004G224800--Sobic010G039800 Sobic001G367000 Sobic001G367000 Sobic004G224800--Sobic001G367000 Sobic001G126200 Sobic001G126200 Sobic004G224800--Sobic001G126200 Sobic004G224800--Sobic001G054200 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G168600 Sobic010G168600 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic007G045600--Sobic003G124800 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic004G130900--Sobic002G400000 Sobic004G130900--Sobic004G327300 Sobic004G130900--Sobic003G261400 Sobic003G367451 Sobic003G367451 Sobic004G130900--Sobic003G367451 Sobic004G130900--Sobic001G005900 Sobic004G130900--Sobic007G096700 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic004G130900--Sobic007G168600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.