Gene annotation
Transcriptome id Sobic.006G232200.1
Synonym ATSYP52, Sb06g030000, SYP52
Functional annotation SNARE domain containing protein, putative, expressed
UniProt A0A1B6PNG7
Pfam PF05739
Panther DB PTHR19957 PTHR19957:SF119
NCBI CDD KOG3202; SNARE protein TLG1/Syntaxin 6
KEGG Orthology K08501; syntaxin 8 K08503syntaxin of plants SYP5
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G79590 : syntaxin of plants 52
RAP-DB (Rice) LOC_Os08g17600.2 : SNARE domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009622 , Zm00025a030816
Brachypodium KQJ95900
Barley HORVU5Hr1G016680.2 , HORVU5Hr1G016680.1
Wheat TraesCS6A02G059100 , TraesCS5B02G069400 , TraesCS5D02G073500 , TraesCS5D02G073500 , TraesCS5A02G062300
Populus -


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cDNA sequences
Sobic.006G232200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.001G143300 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
4 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
5 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
6 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
7 Sobic.001G054200 green ripe-like, putative, expressed -
8 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
9 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
10 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
11 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
12 Sobic.003G386100 selenoprotein precursor, putative, expressed -
13 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
14 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
15 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
16 Sobic.001G048832 - -
17 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
18 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
19 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
20 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G232200 Sobic006G232200 Sobic003G124800 Sobic003G124800 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic009G198500 Sobic009G198500 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic007G045600--Sobic003G124800 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic001G143300--Sobic006G232200 Sobic007G096700 Sobic007G096700 Sobic001G143300--Sobic007G096700 Sobic001G143300--Sobic003G124800 Sobic004G224800 Sobic004G224800 Sobic001G143300--Sobic004G224800 Sobic001G143300--Sobic009G198500 Sobic010G083700 Sobic010G083700 Sobic001G143300--Sobic010G083700 Sobic001G143300--Sobic007G045600 Sobic003G007500 Sobic003G007500 Sobic001G143300--Sobic003G007500 Sobic004G130900 Sobic004G130900 Sobic001G143300--Sobic004G130900 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic002G400000 Sobic002G400000 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic009G217900 Sobic009G217900 Sobic004G130100--Sobic009G217900 Sobic004G130100--Sobic006G232200 Sobic001G501200 Sobic001G501200 Sobic004G130100--Sobic001G501200 Sobic003G337000 Sobic003G337000 Sobic004G130100--Sobic003G337000 Sobic002G363100 Sobic002G363100 Sobic004G130100--Sobic002G363100 Sobic004G130100--Sobic003G124800 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic003G323600--Sobic007G045600 Sobic003G323600--Sobic007G019100 Sobic003G323600--Sobic006G232200 Sobic001G459500 Sobic001G459500 Sobic003G323600--Sobic001G459500 Sobic003G367451 Sobic003G367451 Sobic003G323600--Sobic003G367451 Sobic003G323600--Sobic007G142500 Sobic001G132100 Sobic001G132100 Sobic003G323600--Sobic001G132100 Sobic001G236300 Sobic001G236300 Sobic003G323600--Sobic001G236300 Sobic001G048832 Sobic001G048832 Sobic003G323600--Sobic001G048832 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic002G263800 Sobic002G263800 Sobic008G161800--Sobic002G263800 Sobic006G141500 Sobic006G141500 Sobic008G161800--Sobic006G141500 Sobic001G415500 Sobic001G415500 Sobic008G161800--Sobic001G415500 Sobic003G253000 Sobic003G253000 Sobic008G161800--Sobic003G253000 Sobic006G108400 Sobic006G108400 Sobic008G161800--Sobic006G108400 Sobic007G095400 Sobic007G095400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic003G349300 Sobic003G349300 Sobic001G388200--Sobic003G349300 Sobic001G388200--Sobic006G232200 Sobic009G135600 Sobic009G135600 Sobic001G388200--Sobic009G135600 Sobic001G388200--Sobic010G083700 Sobic002G281300 Sobic002G281300 Sobic001G388200--Sobic002G281300 Sobic001G388200--Sobic001G054200 Sobic010G000900 Sobic010G000900 Sobic001G388200--Sobic010G000900 Sobic001G314500 Sobic001G314500 Sobic001G388200--Sobic001G314500 Sobic001G388200--Sobic003G261400
Octagon: transcription factors


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