Gene annotation
Transcriptome id Sobic.001G388200.4,Sobic.001G388200.2
Synonym Sb01g036800
Functional annotation ELMO/CED-12 family protein, putative, expressed
UniProt A0A1B6QNH8
Pfam PF04727
Panther DB PTHR12771 PTHR12771:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03610 : ELMO/CED-12 family protein
RAP-DB (Rice) LOC_Os03g20670.1 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002254
Brachypodium PNT77497 , PNT77498
Barley HORVU4Hr1G051790.10 , HORVU4Hr1G051790.8 , HORVU4Hr1G051790.9 , HORVU4Hr1G051790.1 , HORVU4Hr1G051790.2 , HORVU4Hr1G051790.3 , HORVU4Hr1G051790.4 , HORVU4Hr1G051790.5 , HORVU4Hr1G051790.6 , HORVU4Hr1G051790.7
Wheat TraesCS4B02G175700 , TraesCS4B02G175700 , TraesCS4A02G129000 , TraesCS4A02G129000 , TraesCS4A02G129000 , TraesCS4D02G177600 , TraesCS4D02G177600
Populus -


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cDNA sequences
Sobic.001G388200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
2 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
3 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
4 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
5 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
6 Sobic.001G054200 green ripe-like, putative, expressed -
7 Sobic.010G000900 spotted leaf 11, putative, expressed -
8 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
9 Sobic.003G261400 DUF292 domain containing protein, expressed -
10 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
11 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
12 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
13 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
14 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
15 Sobic.010G253800 expressed protein -
16 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
17 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
18 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
19 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.010G205300 secreted salivary protein, putative, expressed -


Gene co-expression network
sample Sobic001G388200 Sobic001G388200 Sobic003G349300 Sobic003G349300 Sobic001G388200--Sobic003G349300 Sobic006G232200 Sobic006G232200 Sobic001G388200--Sobic006G232200 Sobic009G135600 Sobic009G135600 Sobic001G388200--Sobic009G135600 Sobic010G083700 Sobic010G083700 Sobic001G388200--Sobic010G083700 Sobic002G281300 Sobic002G281300 Sobic001G388200--Sobic002G281300 Sobic001G054200 Sobic001G054200 Sobic001G388200--Sobic001G054200 Sobic010G000900 Sobic010G000900 Sobic001G388200--Sobic010G000900 Sobic001G314500 Sobic001G314500 Sobic001G388200--Sobic001G314500 Sobic003G261400 Sobic003G261400 Sobic001G388200--Sobic003G261400 Sobic010G205300 Sobic010G205300 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic003G124800 Sobic003G124800 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic009G198500 Sobic009G198500 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic006G232200--Sobic001G388200 Sobic001G461900 Sobic001G461900 Sobic009G135600--Sobic001G461900 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G168600 Sobic010G168600 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic001G067900 Sobic001G067900 Sobic002G281300--Sobic001G067900 Sobic002G281300--Sobic010G205300 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic002G281300--Sobic001G054200 Sobic002G281300--Sobic003G349300 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic001G314500--Sobic007G168600 Sobic001G314500--Sobic001G388200 Sobic001G314500--Sobic006G232200 Sobic001G314500--Sobic001G054200 Sobic009G004600 Sobic009G004600 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic003G217400 Sobic003G217400 Sobic001G314500--Sobic003G217400 Sobic003G261400--Sobic001G283200 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic003G261400--Sobic004G130900 Sobic003G261400--Sobic003G124800 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900
Octagon: transcription factors


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