Gene annotation
Transcriptome id Sobic.003G015900.1
Synonym EMB2769, Sb03g001570
Functional annotation CWC15 homolog A, putative, expressed
UniProt C5XKF0
Pfam PF04889
Panther DB PTHR12718
NCBI CDD KOG3228; Uncharacterized conserved protein
KEGG Orthology K12863; protein CWC15
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT3G13200 : Cwf15 / Cwc15 cell cycle control family protein
RAP-DB (Rice) LOC_Os06g01700.1 : CWC15 homolog A, putative, expressed
MaizeGDB (Corn) Zm00025a022887 , Zm00025a035937
Brachypodium KQK20040
Barley HORVU5Hr1G085560.5 , HORVU5Hr1G085560.4 , HORVU5Hr1G085560.3 , HORVU5Hr1G085560.2 , HORVU5Hr1G085560.1 , HORVU7Hr1G001880.6 , HORVU7Hr1G001880.4 , HORVU7Hr1G001880.5 , HORVU7Hr1G001880.3 , HORVU7Hr1G001880.1
Wheat TraesCS7D02G015500
Populus -


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cDNA sequences
Sobic.003G015900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
2 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
3 Sobic.002G352600 expressed protein -
4 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
5 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
6 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
7 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
8 Sobic.010G000900 spotted leaf 11, putative, expressed -
9 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
10 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
11 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
12 Sobic.003G153700 expressed protein -
13 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
15 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
17 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
18 Sobic.001G054200 green ripe-like, putative, expressed -
19 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38


Gene co-expression network
sample Sobic003G015900 Sobic003G015900 Sobic001G051200 Sobic001G051200 Sobic003G015900--Sobic001G051200 Sobic010G083700 Sobic010G083700 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic001G047400 Sobic001G047400 Sobic003G015900--Sobic001G047400 Sobic009G165800 Sobic009G165800 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic004G253000 Sobic004G253000 Sobic003G015900--Sobic004G253000 Sobic010G000900 Sobic010G000900 Sobic003G015900--Sobic010G000900 Sobic009G246950 Sobic009G246950 Sobic003G015900--Sobic009G246950 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic001G054200 Sobic001G054200 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic002G352600--Sobic003G015900 Sobic010G027600 Sobic010G027600 Sobic002G352600--Sobic010G027600 Sobic009G228700 Sobic009G228700 Sobic002G352600--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic002G352600--Sobic004G121100 Sobic009G217100 Sobic009G217100 Sobic002G352600--Sobic009G217100 Sobic001G121200 Sobic001G121200 Sobic002G352600--Sobic001G121200 Sobic002G352600--Sobic010G000900 Sobic004G066200 Sobic004G066200 Sobic002G352600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic002G352600--Sobic003G248200 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic001G047400--Sobic003G015900 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic001G047400--Sobic009G228700 Sobic001G080700 Sobic001G080700 Sobic009G165800--Sobic001G080700 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic009G165800--Sobic003G015900 Sobic009G165800--Sobic010G083700 Sobic009G165800--Sobic010G251000 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic004G086600--Sobic007G168600 Sobic007G045600 Sobic007G045600 Sobic004G086600--Sobic007G045600 Sobic004G086600--Sobic001G007200 Sobic001G502200 Sobic001G502200 Sobic004G086600--Sobic001G502200 Sobic006G232200 Sobic006G232200 Sobic004G086600--Sobic006G232200 Sobic001G461900 Sobic001G461900 Sobic004G086600--Sobic001G461900 Sobic003G124800 Sobic003G124800 Sobic004G086600--Sobic003G124800 Sobic001G415500 Sobic001G415500 Sobic004G086600--Sobic001G415500 Sobic004G086600--Sobic003G015900 Sobic003G050600 Sobic003G050600 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic004G253000--Sobic003G015900 Sobic003G250500 Sobic003G250500 Sobic004G253000--Sobic003G250500 Sobic004G059000 Sobic004G059000 Sobic004G253000--Sobic004G059000 Sobic004G253000--Sobic001G051200 Sobic004G253000--Sobic009G246950 Sobic003G000800 Sobic003G000800 Sobic004G253000--Sobic003G000800 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic009G246950--Sobic001G007200
Octagon: transcription factors


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