Gene annotation
Transcriptome id Sobic.003G153700.1,Sobic.003G153700.2
Synonym Sb03g013410
Functional annotation expressed protein
UniProt C5XJR4 , A0A1B6Q3C7
Pfam PF05832
Panther DB PTHR13019 PTHR13019:SF14
NCBI CDD KOG3195; Uncharacterized membrane protein NPD008/CGI-148
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G09330 : -
RAP-DB (Rice) LOC_Os01g22870.1 : expressed protein
MaizeGDB (Corn) Zm00025a024425 , Zm00025a038022
Brachypodium KQK07361 , KQK07362 , KQK04221
Barley HORVU1Hr1G023500.9 , HORVU1Hr1G023500.8 , HORVU1Hr1G023500.1 , HORVU1Hr1G023500.11 , HORVU1Hr1G023500.3 , HORVU1Hr1G023500.2 , HORVU1Hr1G023500.5 , HORVU1Hr1G023500.10 , HORVU1Hr1G023500.7 , HORVU1Hr1G023500.6 , HORVU1Hr1G023500.4
Wheat TraesCS1D02G109000 , TraesCS1B02G128400 , TraesCS1A02G106000
Populus -


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cDNA sequences
Sobic.003G153700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
2 Sobic.003G366500 transport protein particle component, Bet3, domain containing protein, expressed -
3 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
4 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
5 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
6 Sobic.002G352600 expressed protein -
7 Sobic.009G228700 expressed protein -
8 Sobic.001G376800 - K13116: DDX41, ATP-dependent RNA helicase DDX41
9 Sobic.002G418700 expressed protein -
10 Sobic.003G050600 expressed protein -
11 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
12 Sobic.007G183700 la domain containing protein, expressed K15191: La-related protein 7
13 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
14 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
15 Sobic.001G048700 TBC domain containing protein, expressed -
16 Sobic.002G113900 lipid binding protein, putative, expressed -
17 Sobic.007G179800 TBC domain containing protein, expressed -
18 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
19 Sobic.007G102800 expressed protein -
20 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G153700 Sobic003G153700 Sobic003G015900 Sobic003G015900 Sobic003G153700--Sobic003G015900 Sobic003G366500 Sobic003G366500 Sobic003G153700--Sobic003G366500 Sobic003G312200 Sobic003G312200 Sobic003G153700--Sobic003G312200 Sobic001G051200 Sobic001G051200 Sobic003G153700--Sobic001G051200 Sobic004G059000 Sobic004G059000 Sobic003G153700--Sobic004G059000 Sobic002G352600 Sobic002G352600 Sobic003G153700--Sobic002G352600 Sobic009G228700 Sobic009G228700 Sobic003G153700--Sobic009G228700 Sobic001G376800 Sobic001G376800 Sobic003G153700--Sobic001G376800 Sobic002G418700 Sobic002G418700 Sobic003G153700--Sobic002G418700 Sobic003G015900--Sobic001G051200 Sobic010G083700 Sobic010G083700 Sobic003G015900--Sobic010G083700 Sobic003G015900--Sobic002G352600 Sobic001G047400 Sobic001G047400 Sobic003G015900--Sobic001G047400 Sobic009G165800 Sobic009G165800 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic004G253000 Sobic004G253000 Sobic003G015900--Sobic004G253000 Sobic010G000900 Sobic010G000900 Sobic003G015900--Sobic010G000900 Sobic009G246950 Sobic009G246950 Sobic003G015900--Sobic009G246950 Sobic003G366500--Sobic003G153700 Sobic001G221500 Sobic001G221500 Sobic003G366500--Sobic001G221500 Sobic001G466700 Sobic001G466700 Sobic003G366500--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic003G366500--Sobic004G274400 Sobic001G260400 Sobic001G260400 Sobic003G366500--Sobic001G260400 Sobic007G183700 Sobic007G183700 Sobic003G366500--Sobic007G183700 Sobic006G249700 Sobic006G249700 Sobic003G366500--Sobic006G249700 Sobic007G026300 Sobic007G026300 Sobic003G366500--Sobic007G026300 Sobic003G181800 Sobic003G181800 Sobic003G366500--Sobic003G181800 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic004G305600 Sobic004G305600 Sobic004G059000--Sobic004G305600 Sobic001G061700 Sobic001G061700 Sobic004G059000--Sobic001G061700 Sobic003G250500 Sobic003G250500 Sobic004G059000--Sobic003G250500 Sobic007G019800 Sobic007G019800 Sobic004G059000--Sobic007G019800 Sobic004G059000--Sobic004G253000 Sobic001G131800 Sobic001G131800 Sobic004G059000--Sobic001G131800 Sobic002G256300 Sobic002G256300 Sobic004G059000--Sobic002G256300 Sobic002G365100 Sobic002G365100 Sobic004G059000--Sobic002G365100 Sobic003G405700 Sobic003G405700 Sobic004G059000--Sobic003G405700 Sobic002G352600--Sobic003G015900 Sobic010G027600 Sobic010G027600 Sobic002G352600--Sobic010G027600 Sobic002G352600--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic002G352600--Sobic004G121100 Sobic009G217100 Sobic009G217100 Sobic002G352600--Sobic009G217100 Sobic001G121200 Sobic001G121200 Sobic002G352600--Sobic001G121200 Sobic002G352600--Sobic010G000900 Sobic004G066200 Sobic004G066200 Sobic002G352600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic002G352600--Sobic003G248200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic002G034600 Sobic002G034600 Sobic001G376800--Sobic002G034600 Sobic007G056500 Sobic007G056500 Sobic001G376800--Sobic007G056500 Sobic006G121300 Sobic006G121300 Sobic001G376800--Sobic006G121300 Sobic001G473600 Sobic001G473600 Sobic001G376800--Sobic001G473600 Sobic001G376800--Sobic004G059000 Sobic006G017000 Sobic006G017000 Sobic001G376800--Sobic006G017000 Sobic010G028300 Sobic010G028300 Sobic001G376800--Sobic010G028300 Sobic001G395100 Sobic001G395100 Sobic001G376800--Sobic001G395100 Sobic001G376800--Sobic001G131800 Sobic002G418700--Sobic001G323000 Sobic006G194500 Sobic006G194500 Sobic002G418700--Sobic006G194500 Sobic001G117300 Sobic001G117300 Sobic002G418700--Sobic001G117300 Sobic002G418700--Sobic003G312200 Sobic007G077400 Sobic007G077400 Sobic002G418700--Sobic007G077400 Sobic001G143500 Sobic001G143500 Sobic002G418700--Sobic001G143500 Sobic002G418700--Sobic009G228700 Sobic002G418700--Sobic001G085100 Sobic002G418700--Sobic004G059000
Octagon: transcription factors


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