Gene annotation
Transcriptome id Sobic.004G305600.1
Synonym SKIP, Sb04g033860
Functional annotation SKIP/SNW domain containing protein, expressed
UniProt C5XSR7
Pfam PF02731
Panther DB PTHR12096
NCBI CDD -
KEGG Orthology K06063; SNW1, SKIIP, SNW domain-containing protein 1
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G77180 : chromatin protein family
RAP-DB (Rice) LOC_Os02g52250.1 : SKIP/SNW domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022180 , Zm00025a033123
Brachypodium PNT69593 , PNT69592 , KQK01798 , KQK01799 , KQK01800
Barley HORVU6Hr1G077540.2 , HORVU6Hr1G077540.1
Wheat TraesCS6A02G315200
Populus PNS93405


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
2 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
3 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
4 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.003G127400 BSD domain-containing protein, putative, expressed -
6 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
7 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
8 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
9 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
10 Sobic.002G113900 lipid binding protein, putative, expressed -
11 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
12 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
13 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
14 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
15 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
16 Sobic.002G272600 TBC domain containing protein, expressed -
17 Sobic.008G142700 expressed protein -
18 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
19 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
20 Sobic.009G198100 expressed protein -


Gene co-expression network
sample Sobic004G305600 Sobic004G305600 Sobic004G059000 Sobic004G059000 Sobic004G305600--Sobic004G059000 Sobic003G405700 Sobic003G405700 Sobic004G305600--Sobic003G405700 Sobic003G250500 Sobic003G250500 Sobic004G305600--Sobic003G250500 Sobic002G256300 Sobic002G256300 Sobic004G305600--Sobic002G256300 Sobic003G127400 Sobic003G127400 Sobic004G305600--Sobic003G127400 Sobic005G000800 Sobic005G000800 Sobic004G305600--Sobic005G000800 Sobic009G246950 Sobic009G246950 Sobic004G305600--Sobic009G246950 Sobic001G512900 Sobic001G512900 Sobic004G305600--Sobic001G512900 Sobic004G253000 Sobic004G253000 Sobic004G305600--Sobic004G253000 Sobic004G059000--Sobic004G305600 Sobic001G061700 Sobic001G061700 Sobic004G059000--Sobic001G061700 Sobic004G059000--Sobic003G250500 Sobic007G019800 Sobic007G019800 Sobic004G059000--Sobic007G019800 Sobic004G059000--Sobic004G253000 Sobic001G131800 Sobic001G131800 Sobic004G059000--Sobic001G131800 Sobic004G059000--Sobic002G256300 Sobic002G365100 Sobic002G365100 Sobic004G059000--Sobic002G365100 Sobic004G059000--Sobic003G405700 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic006G183000 Sobic006G183000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic003G250500--Sobic004G059000 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic003G127400--Sobic001G512900 Sobic003G127400--Sobic009G246950 Sobic003G127400--Sobic004G305600 Sobic003G127400--Sobic002G256300 Sobic001G078500 Sobic001G078500 Sobic003G127400--Sobic001G078500 Sobic003G000800 Sobic003G000800 Sobic003G127400--Sobic003G000800 Sobic008G142700 Sobic008G142700 Sobic003G127400--Sobic008G142700 Sobic003G127400--Sobic009G171700 Sobic003G127400--Sobic010G168600 Sobic010G211300 Sobic010G211300 Sobic005G000800--Sobic010G211300 Sobic004G013600 Sobic004G013600 Sobic005G000800--Sobic004G013600 Sobic006G110300 Sobic006G110300 Sobic005G000800--Sobic006G110300 Sobic005G000800--Sobic004G305600 Sobic008G001100 Sobic008G001100 Sobic005G000800--Sobic008G001100 Sobic004G350100 Sobic004G350100 Sobic005G000800--Sobic004G350100 Sobic005G000800--Sobic002G272600 Sobic001G028400 Sobic001G028400 Sobic005G000800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic005G000800--Sobic010G033400 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic001G007200 Sobic001G007200 Sobic009G246950--Sobic001G007200 Sobic010G071200 Sobic010G071200 Sobic001G512900--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G512900--Sobic010G055500 Sobic001G512900--Sobic008G142700 Sobic008G174300 Sobic008G174300 Sobic001G512900--Sobic008G174300 Sobic001G083600 Sobic001G083600 Sobic001G512900--Sobic001G083600 Sobic001G390500 Sobic001G390500 Sobic001G512900--Sobic001G390500 Sobic001G149700 Sobic001G149700 Sobic001G512900--Sobic001G149700 Sobic001G512900--Sobic003G127400 Sobic001G512900--Sobic009G246950 Sobic003G050600 Sobic003G050600 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic004G253000--Sobic003G015900 Sobic004G253000--Sobic003G250500 Sobic004G253000--Sobic004G059000 Sobic001G051200 Sobic001G051200 Sobic004G253000--Sobic001G051200 Sobic004G253000--Sobic009G246950 Sobic004G253000--Sobic003G000800
Octagon: transcription factors


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