Gene annotation
Transcriptome id Sobic.008G142700.1
Synonym Sb08g019340
Functional annotation expressed protein
UniProt C5YQF9
Pfam PF12767
Panther DB PTHR21277 PTHR21277:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G14850 : -
RAP-DB (Rice) LOC_Os12g39090.2 : expressed protein
MaizeGDB (Corn) Zm00025a004373 , Zm00025a025170
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G142700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
2 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
3 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
4 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
5 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
6 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
7 Sobic.006G109300 protein binding protein, putative, expressed -
8 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
9 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
10 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
11 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
12 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
13 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
14 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
15 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
16 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
17 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
18 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
19 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
20 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -


Gene co-expression network
sample Sobic008G142700 Sobic008G142700 Sobic010G071200 Sobic010G071200 Sobic008G142700--Sobic010G071200 Sobic001G512900 Sobic001G512900 Sobic008G142700--Sobic001G512900 Sobic010G055500 Sobic010G055500 Sobic008G142700--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic008G142700--Sobic001G149700 Sobic007G063200 Sobic007G063200 Sobic008G142700--Sobic007G063200 Sobic003G350600 Sobic003G350600 Sobic008G142700--Sobic003G350600 Sobic006G109300 Sobic006G109300 Sobic008G142700--Sobic006G109300 Sobic009G246950 Sobic009G246950 Sobic008G142700--Sobic009G246950 Sobic001G478300 Sobic001G478300 Sobic008G142700--Sobic001G478300 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic001G512900--Sobic010G071200 Sobic001G512900--Sobic010G055500 Sobic001G512900--Sobic008G142700 Sobic008G174300 Sobic008G174300 Sobic001G512900--Sobic008G174300 Sobic001G512900--Sobic001G083600 Sobic001G390500 Sobic001G390500 Sobic001G512900--Sobic001G390500 Sobic001G512900--Sobic001G149700 Sobic003G127400 Sobic003G127400 Sobic001G512900--Sobic003G127400 Sobic001G512900--Sobic009G246950 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic010G055500--Sobic006G109300 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic003G273100 Sobic003G273100 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G149700--Sobic001G512900 Sobic007G063200--Sobic004G263900 Sobic001G028400 Sobic001G028400 Sobic007G063200--Sobic001G028400 Sobic003G359300 Sobic003G359300 Sobic007G063200--Sobic003G359300 Sobic010G033400 Sobic010G033400 Sobic007G063200--Sobic010G033400 Sobic007G063200--Sobic010G071200 Sobic003G026300 Sobic003G026300 Sobic007G063200--Sobic003G026300 Sobic007G063200--Sobic010G055500 Sobic007G063200--Sobic006G257900 Sobic007G063200--Sobic008G142700 Sobic004G072800 Sobic004G072800 Sobic003G350600--Sobic004G072800 Sobic001G512600 Sobic001G512600 Sobic003G350600--Sobic001G512600 Sobic003G007500 Sobic003G007500 Sobic003G350600--Sobic003G007500 Sobic003G350600--Sobic008G142700 Sobic003G226500 Sobic003G226500 Sobic003G350600--Sobic003G226500 Sobic001G427800 Sobic001G427800 Sobic003G350600--Sobic001G427800 Sobic009G232400 Sobic009G232400 Sobic003G350600--Sobic009G232400 Sobic001G061700 Sobic001G061700 Sobic003G350600--Sobic001G061700 Sobic001G067900 Sobic001G067900 Sobic003G350600--Sobic001G067900 Sobic006G109300--Sobic010G055500 Sobic006G109300--Sobic010G071200 Sobic006G109300--Sobic004G150400 Sobic006G109300--Sobic010G033400 Sobic002G365100 Sobic002G365100 Sobic006G109300--Sobic002G365100 Sobic006G109300--Sobic008G142700 Sobic001G131800 Sobic001G131800 Sobic006G109300--Sobic001G131800 Sobic006G109300--Sobic007G063200 Sobic002G272800 Sobic002G272800 Sobic006G109300--Sobic002G272800 Sobic002G256300 Sobic002G256300 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic010G168600 Sobic010G168600 Sobic009G246950--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic009G246950--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic001G007200 Sobic001G007200 Sobic009G246950--Sobic001G007200 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic001G478300--Sobic010G055500 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.