Gene annotation
| Transcriptome id | Sobic.010G071200.1 |
|---|---|
| Synonym | Sb10g006220, UBC33, Ubiquitin-conjugating enzyme |
| Functional annotation | "Belonging to the Sdw3 locus, Sbi_sdw3" (PubMedID : 20464438) ubiquitin-conjugating enzyme, putative, expressed |
| UniProt | C5Z5X9 |
| Pfam | PF00179 |
| Panther DB | PTHR24067 PTHR24067:SF42 |
| NCBI CDD | KOG0894; Ubiquitin-protein ligase |
| KEGG Orthology | K04554; UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G50430 : ubiquitin-conjugating enzyme 33 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g09330.1 : ubiquitin-conjugating enzyme, putative, expressed |
| MaizeGDB (Corn) | Zm00025a013036 , Zm00025a004916 , Zm00025a024089 , Zm00025a042428 , Zm00025a004214 , Zm00025a049705 , Zm00025a035101 , Zm00025a031186 |
| Brachypodium | KQK19173 |
| Barley | HORVU7Hr1G032310.8 , HORVU7Hr1G032310.9 , HORVU7Hr1G032310.4 , HORVU7Hr1G032310.5 , HORVU7Hr1G032310.6 , HORVU7Hr1G032310.1 , HORVU7Hr1G032310.2 , HORVU1Hr1G042340.1 , HORVU7Hr1G032310.12 , HORVU7Hr1G032310.10 , HORVU7Hr1G032310.11 , HORVU5Hr1G030250.1 , HORVU5Hr1G030250.3 , HORVU5Hr1G030250.2 , HORVU5Hr1G030250.5 , HORVU5Hr1G030250.4 |
| Wheat | TraesCS7B02G061500 , TraesCS7B02G061500 , TraesCS7D02G157700 , TraesCS7A02G157200 |
| Populus | - |
JBrowse
| Sobic.010G071200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G055500 | RNA-binding motif protein, putative, expressed | K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11 |
| 2 | Sobic.001G149700 | vesicle transport v-SNARE protein, putative, expressed | K08496: GOSR2, golgi SNAP receptor complex member 2 |
| 3 | Sobic.004G231400 | OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed | - |
| 4 | Sobic.004G263900 | RNA-binding motif protein, putative, expressed | K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11 |
| 5 | Sobic.008G142700 | expressed protein | - |
| 6 | Sobic.001G512900 | heat shock protein DnaJ, putative, expressed | K09537: DnaJ homolog subfamily C member 17 |
| 7 | Sobic.001G478300 | modifier of rudimentary protein, expressed | K12185: ESCRT-I complex subunit VPS37 |
| 8 | Sobic.006G257900 | ubiquitin-conjugating enzyme, putative, expressed | K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D |
| 9 | Sobic.001G083600 | 26S proteasome non-ATPase regulatory subunit 10, putative, expressed | K06694: 26S proteasome non-ATPase regulatory subunit 10 |
| 10 | Sobic.007G063200 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | K08066: NFYC, nuclear transcription factor Y, gamma |
| 11 | Sobic.001G390500 | SNF1-related protein kinase regulatory subunit beta-1, putative, expressed | K07199: 5'-AMP-activated protein kinase, regulatory beta subunit |
| 12 | Sobic.004G150400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 13 | Sobic.006G109300 | protein binding protein, putative, expressed | - |
| 14 | Sobic.001G427800 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 15 | Sobic.001G028400 | domain of unknown function domain containing protein, expressed | - |
| 16 | Sobic.002G346900 | pre-mRNA-splicing factor, putative, expressed | K12817: PRPF18, pre-mRNA-splicing factor 18 |
| 17 | Sobic.009G036900 | RNA recognition motif containing protein, putative, expressed | K12876: RBM8A, RNA-binding protein 8A |
| 18 | Sobic.009G034400 | OsFBX48 - F-box domain containing protein, expressed | - |
| 19 | Sobic.001G309100 | zinc knuckle domain containing protein, expressed | K09250: cellular nucleic acid-binding protein |
| 20 | Sobic.003G317200 | vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed | K12184: ESCRT-I complex subunit VPS28 |
Gene co-expression network
Octagon: transcription factors
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