Gene annotation
Transcriptome id Sobic.006G257900.1
Synonym Sb06g032120, UBC28
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5YA13
Pfam PF05773
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G64230 : ubiquitin-conjugating enzyme 28
RAP-DB (Rice) LOC_Os04g57220.2 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a009384 , Zm00025a027071 , Zm00025a039774
Brachypodium KQJ85185
Barley HORVU2Hr1G118240.8 , HORVU2Hr1G118240.4 , HORVU2Hr1G118240.5 , HORVU2Hr1G118240.6 , HORVU2Hr1G118240.1 , HORVU2Hr1G118240.2 , HORVU2Hr1G118240.3
Wheat TraesCS1D02G082400 , TraesCS2A02G539800 , TraesCS2D02G541400 , TraesCS2D02G541400 , TraesCS1B02G311400 , TraesCS4D02G067200 , TraesCS3A02G487000 , TraesCS1D02G104600 , TraesCS3D02G482300 , TraesCS1D02G301300 , TraesCS2B02G570100
Populus -


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cDNA sequences
Sobic.006G257900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
2 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
3 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
4 Sobic.010G154150 - -
5 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
6 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
7 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
8 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
9 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
10 Sobic.010G228600 LSM domain containing protein, expressed -
11 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
12 Sobic.009G183500 expressed protein -
13 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
14 Sobic.008G142700 expressed protein -
15 Sobic.001G471900 C2 domain containing protein, putative, expressed -
16 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
17 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
18 Sobic.001G225100 expressed protein -
19 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
20 Sobic.005G167300 BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -


Gene co-expression network
sample Sobic006G257900 Sobic006G257900 Sobic010G071200 Sobic010G071200 Sobic006G257900--Sobic010G071200 Sobic001G149700 Sobic001G149700 Sobic006G257900--Sobic001G149700 Sobic001G478300 Sobic001G478300 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic004G231400 Sobic004G231400 Sobic006G257900--Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic008G142700 Sobic008G142700 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic003G273100 Sobic003G273100 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G149700--Sobic001G512900 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic001G478300--Sobic010G055500 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic010G154150--Sobic006G257900 Sobic010G154150--Sobic004G164500 Sobic001G471900 Sobic001G471900 Sobic010G154150--Sobic001G471900 Sobic010G228600 Sobic010G228600 Sobic010G154150--Sobic010G228600 Sobic009G034400 Sobic009G034400 Sobic010G154150--Sobic009G034400 Sobic001G056700 Sobic001G056700 Sobic010G154150--Sobic001G056700 Sobic008G106800 Sobic008G106800 Sobic010G154150--Sobic008G106800 Sobic010G218100 Sobic010G218100 Sobic010G154150--Sobic010G218100 Sobic009G036900 Sobic009G036900 Sobic010G154150--Sobic009G036900 Sobic007G063200--Sobic004G263900 Sobic001G028400 Sobic001G028400 Sobic007G063200--Sobic001G028400 Sobic003G359300 Sobic003G359300 Sobic007G063200--Sobic003G359300 Sobic010G033400 Sobic010G033400 Sobic007G063200--Sobic010G033400 Sobic007G063200--Sobic010G071200 Sobic003G026300 Sobic003G026300 Sobic007G063200--Sobic003G026300 Sobic007G063200--Sobic010G055500 Sobic007G063200--Sobic006G257900 Sobic007G063200--Sobic008G142700 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic004G231400--Sobic006G209500 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic010G055500--Sobic004G150400 Sobic004G188300--Sobic003G026300 Sobic003G093600 Sobic003G093600 Sobic004G188300--Sobic003G093600 Sobic001G222300 Sobic001G222300 Sobic004G188300--Sobic001G222300 Sobic007G150200 Sobic007G150200 Sobic004G188300--Sobic007G150200 Sobic009G183500 Sobic009G183500 Sobic004G188300--Sobic009G183500 Sobic007G023700 Sobic007G023700 Sobic004G188300--Sobic007G023700 Sobic004G188300--Sobic006G257900 Sobic005G167300 Sobic005G167300 Sobic004G188300--Sobic005G167300 Sobic004G188300--Sobic010G218100 Sobic004G164500--Sobic001G471900 Sobic001G311000 Sobic001G311000 Sobic004G164500--Sobic001G311000 Sobic009G065000 Sobic009G065000 Sobic004G164500--Sobic009G065000 Sobic004G164500--Sobic008G106800 Sobic004G164500--Sobic001G056700 Sobic004G164500--Sobic010G154150 Sobic004G164500--Sobic006G257900 Sobic004G164500--Sobic010G228600 Sobic007G177100 Sobic007G177100 Sobic004G164500--Sobic007G177100
Octagon: transcription factors


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