Gene annotation
| Transcriptome id | Sobic.004G188300.2,Sobic.004G188300.1 |
|---|---|
| Synonym | Sb04g023670, Sensitive to proton rhizotoxicity 1, STOP1, SbSTOP1b |
| Functional annotation | regulation of Al tolerance genes and proton tolerance genes (PubMedID : 29541086) ZOS2-11 - C2H2 zinc finger protein, expressed |
| UniProt | A0A1Z5RND6 |
| Pfam | - |
| Panther DB | PTHR10593 PTHR10593:SF41 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G34370 : C2H2 and C2HC zinc fingers superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g36360.2 : ZOS2-11 - C2H2 zinc finger protein, expressed |
| MaizeGDB (Corn) | Zm00025a020782 |
| Brachypodium | KQJ99994 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G188300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G026300 | BES1/BZR1 homolog protein, putative, expressed | - |
| 2 | Sobic.003G093600 | methyltransferase, putative, expressed | - |
| 3 | Sobic.001G222300 | cyclin-dependent kinase inhibitor, putative, expressed | - |
| 4 | Sobic.007G150200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed | - |
| 5 | Sobic.009G183500 | expressed protein | - |
| 6 | Sobic.007G023700 | MA3 domain containing protein, expressed | - |
| 7 | Sobic.006G257900 | ubiquitin-conjugating enzyme, putative, expressed | K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D |
| 8 | Sobic.005G167300 | BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed | - |
| 9 | Sobic.010G218100 | expressed protein | - |
| 10 | Sobic.002G221900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 11 | Sobic.007G063200 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | K08066: NFYC, nuclear transcription factor Y, gamma |
| 12 | Sobic.001G451000 | two-component response regulator, putative, expressed | K14491: two-component response regulator ARR-B family |
| 13 | Sobic.005G162600 | zinc knuckle domain containing protein, expressed | - |
| 14 | Sobic.007G008800 | VHS and GAT domain containing protein, expressed | - |
| 15 | Sobic.002G284200 | peroxisomal multifunctional enzyme type 2, putative, expressed | - |
| 16 | Sobic.003G117000 | late embryogenesis abundant protein, putative, expressed | - |
| 17 | Sobic.010G260500 | pre-mRNA-splicing factor syf2, putative, expressed | K12868: pre-mRNA-splicing factor SYF2 |
| 18 | Sobic.003G044900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 19 | Sobic.010G055500 | RNA-binding motif protein, putative, expressed | K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11 |
| 20 | Sobic.009G022200 | Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed | K12896: splicing factor, arginine/serine-rich 7 |
Gene co-expression network
Octagon: transcription factors
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