Gene annotation
Transcriptome id Sobic.007G008800.1,Sobic.007G008800.2
Synonym Sb07g000940
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A1B6PF09 , A0A1B6PEV5
Pfam PF03127 PF00790
Panther DB PTHR13856 PTHR13856:SF81
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G63640 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os08g01740.1,LOC_Os08g01740.2 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030126 , Zm00025a030305 , Zm00025a040179 , Zm00025a023224
Brachypodium KQJ94804
Barley HORVU7Hr1G077230.1 , HORVU7Hr1G077230.2
Wheat TraesCS7B02G223700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
2 Sobic.004G088400 GTPase-activating protein, putative, expressed -
3 Sobic.K009900 autophagy-related protein 8D, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
4 Sobic.002G177400 expressed protein -
5 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
6 Sobic.002G410200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
8 Sobic.005G139800 Brix domain containing protein, putative, expressed -
9 Sobic.001G271801 - -
10 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
11 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.001G253100 3-5 exonuclease family protein, putative, expressed -
14 Sobic.008G049701 - -
15 Sobic.003G204000 expressed protein -
16 Sobic.009G209800 OsFBX49 - F-box domain containing protein, expressed -
17 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
18 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
19 Sobic.003G336800 expressed protein -
20 Sobic.001G287301 - -


Gene co-expression network
sample Sobic007G008800 Sobic007G008800 Sobic003G026300 Sobic003G026300 Sobic007G008800--Sobic003G026300 Sobic004G088400 Sobic004G088400 Sobic007G008800--Sobic004G088400 SobicK009900 SobicK009900 Sobic007G008800--SobicK009900 Sobic002G177400 Sobic002G177400 Sobic007G008800--Sobic002G177400 Sobic004G076732 Sobic004G076732 Sobic007G008800--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic007G008800--Sobic002G410200 Sobic001G024200 Sobic001G024200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801 Sobic003G026300--Sobic007G008800 Sobic004G188300 Sobic004G188300 Sobic003G026300--Sobic004G188300 Sobic003G026300--Sobic004G088400 Sobic005G167300 Sobic005G167300 Sobic003G026300--Sobic005G167300 Sobic007G063200 Sobic007G063200 Sobic003G026300--Sobic007G063200 Sobic001G451000 Sobic001G451000 Sobic003G026300--Sobic001G451000 Sobic003G026300--Sobic005G139800 Sobic002G115801 Sobic002G115801 Sobic003G026300--Sobic002G115801 Sobic005G162600 Sobic005G162600 Sobic003G026300--Sobic005G162600 Sobic004G088400--Sobic002G177400 Sobic004G088400--Sobic007G008800 Sobic003G336800 Sobic003G336800 Sobic004G088400--Sobic003G336800 Sobic008G117200 Sobic008G117200 Sobic004G088400--Sobic008G117200 Sobic004G088400--Sobic003G026300 Sobic003G346000 Sobic003G346000 Sobic004G088400--Sobic003G346000 Sobic008G129700 Sobic008G129700 Sobic004G088400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic004G088400--Sobic007G116400 Sobic009G030300 Sobic009G030300 Sobic004G088400--Sobic009G030300 SobicK009900--Sobic004G076732 Sobic005G110430 Sobic005G110430 SobicK009900--Sobic005G110430 Sobic001G253100 Sobic001G253100 SobicK009900--Sobic001G253100 Sobic008G042250 Sobic008G042250 SobicK009900--Sobic008G042250 Sobic008G049701 Sobic008G049701 SobicK009900--Sobic008G049701 SobicK009900--Sobic002G410200 Sobic001G287301 Sobic001G287301 SobicK009900--Sobic001G287301 Sobic005G117801 Sobic005G117801 SobicK009900--Sobic005G117801 Sobic009G209800 Sobic009G209800 SobicK009900--Sobic009G209800 Sobic002G177400--Sobic004G088400 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic002G177400--Sobic007G116400 Sobic002G177400--Sobic003G346000 Sobic004G061900 Sobic004G061900 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic004G076732--SobicK009900 Sobic004G076732--Sobic002G410200 Sobic004G076732--Sobic001G253100 Sobic008G009500 Sobic008G009500 Sobic004G076732--Sobic008G009500 Sobic007G073400 Sobic007G073400 Sobic004G076732--Sobic007G073400 Sobic004G076732--Sobic009G209800 Sobic004G076732--Sobic008G042250 Sobic004G076732--Sobic005G110430 Sobic004G212800 Sobic004G212800 Sobic004G076732--Sobic004G212800 Sobic002G410200--Sobic004G076732 Sobic002G410200--Sobic009G209800 Sobic002G410200--SobicK009900 Sobic002G410200--Sobic001G253100 Sobic003G244800 Sobic003G244800 Sobic002G410200--Sobic003G244800 Sobic002G410200--Sobic005G139800 Sobic002G410200--Sobic008G042250 Sobic002G410200--Sobic008G009500 Sobic002G410200--Sobic008G049701 Sobic001G024200--Sobic004G212800 Sobic007G211000 Sobic007G211000 Sobic001G024200--Sobic007G211000 Sobic004G112500 Sobic004G112500 Sobic001G024200--Sobic004G112500 Sobic003G204000 Sobic003G204000 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic004G164600 Sobic004G164600 Sobic001G024200--Sobic004G164600 Sobic001G024200--SobicK009900 Sobic001G439500 Sobic001G439500 Sobic001G024200--Sobic001G439500 Sobic010G248200 Sobic010G248200 Sobic001G024200--Sobic010G248200 Sobic005G139800--Sobic008G049701 Sobic005G139800--Sobic009G209800 Sobic005G139800--Sobic001G287301 Sobic005G139800--Sobic008G042250 Sobic001G240400 Sobic001G240400 Sobic005G139800--Sobic001G240400 Sobic005G139800--Sobic005G117801 Sobic002G056100 Sobic002G056100 Sobic005G139800--Sobic002G056100 Sobic005G139800--Sobic002G410200 Sobic005G221425 Sobic005G221425 Sobic005G139800--Sobic005G221425 Sobic001G271801--Sobic001G287301 Sobic001G271801--Sobic005G139800 Sobic001G271801--Sobic008G049701 Sobic001G271801--Sobic001G272000 Sobic001G271801--Sobic008G042250 Sobic001G271801--SobicK009900 Sobic001G271801--Sobic007G008800 Sobic001G271900 Sobic001G271900 Sobic001G271801--Sobic001G271900 Sobic002G283300 Sobic002G283300 Sobic001G271801--Sobic002G283300
Octagon: transcription factors


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