Gene annotation
Transcriptome id Sobic.001G253100.11,Sobic.001G253100.3,Sobic.001G253100.4,Sobic.001G253100.10,Sobic.001G253100.9,Sobic.001G253100.5,Sobic.001G253100.7,Sobic.001G253100.8,Sobic.001G253100.6
Synonym Sb01g022350
Functional annotation 3-5 exonuclease family protein, putative, expressed
UniProt A0A1Z5S7N7 , A0A1Z5S7C0 , A0A1Z5S7D8 , A0A1Z5S7B8 , A0A1Z5S7B5 , A0A1Z5S7W0 , A0A1Z5S7N0 , A0A1Z5S7A5 , A0A1Z5S7C3
Pfam PF01612
Panther DB PTHR12124 PTHR12124:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G35910 : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
RAP-DB (Rice) LOC_Os03g06190.1 : 3-5 exonuclease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003628 , Zm00025a000724 , Zm00025a012497 , Zm00025a051211 , Zm00025a058017 , Zm00025a058015 , Zm00025a036043 , Zm00025a005231 , Zm00025a058106
Brachypodium KQJ96813 , PNT67421
Barley HORVU4Hr1G072900.14 , HORVU4Hr1G072900.10 , HORVU4Hr1G072900.11 , HORVU4Hr1G072900.12 , HORVU4Hr1G072900.6 , HORVU4Hr1G072900.7 , HORVU4Hr1G072900.5 , HORVU4Hr1G072900.2 , HORVU4Hr1G072900.3 , HORVU4Hr1G072900.1 , HORVU4Hr1G072900.8 , HORVU4Hr1G072900.9
Wheat TraesCS4D02G272400 , TraesCS4D02G272400 , TraesCS1D02G138000 , TraesCS4A02G032200 , TraesCS1B02G155600 , TraesCS1B02G155600 , TraesCS1A02G137000 , TraesCS1A02G137000 , TraesCS4B02G273400 , TraesCS4B02G273400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G117801 - -
2 Sobic.009G209800 OsFBX49 - F-box domain containing protein, expressed -
3 Sobic.005G110430 - -
4 Sobic.008G042250 - -
5 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
6 Sobic.001G240400 ENT domain containing protein, expressed -
7 Sobic.008G091900 - -
8 Sobic.008G049701 - -
9 Sobic.K009900 autophagy-related protein 8D, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
10 Sobic.005G212600 NBS-LRR disease resistance protein, putative, expressed -
11 Sobic.002G221200 zinc knuckle domain containing protein, expressed -
12 Sobic.002G062300 expressed protein -
13 Sobic.002G410200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.008G009500 pentatricopeptide, putative, expressed -
15 Sobic.005G221425 - -
16 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
17 Sobic.002G056100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine Rich Repeat family protein, expressed -
18 Sobic.003G031750 - -
19 Sobic.008G036500 - -
20 Sobic.008G079100 - -


Gene co-expression network
sample Sobic001G253100 Sobic001G253100 Sobic005G117801 Sobic005G117801 Sobic001G253100--Sobic005G117801 Sobic009G209800 Sobic009G209800 Sobic001G253100--Sobic009G209800 Sobic005G110430 Sobic005G110430 Sobic001G253100--Sobic005G110430 Sobic008G042250 Sobic008G042250 Sobic001G253100--Sobic008G042250 Sobic004G076732 Sobic004G076732 Sobic001G253100--Sobic004G076732 Sobic001G240400 Sobic001G240400 Sobic001G253100--Sobic001G240400 Sobic008G091900 Sobic008G091900 Sobic001G253100--Sobic008G091900 Sobic008G049701 Sobic008G049701 Sobic001G253100--Sobic008G049701 SobicK009900 SobicK009900 Sobic001G253100--SobicK009900 Sobic005G117801--Sobic001G253100 Sobic005G117801--Sobic008G091900 Sobic005G117801--Sobic009G209800 Sobic005G117801--Sobic001G240400 Sobic002G221200 Sobic002G221200 Sobic005G117801--Sobic002G221200 Sobic005G117801--Sobic008G049701 Sobic005G117801--Sobic005G110430 Sobic005G117801--Sobic008G042250 Sobic005G117801--SobicK009900 Sobic009G209800--Sobic008G049701 Sobic009G209800--Sobic001G253100 Sobic005G139800 Sobic005G139800 Sobic009G209800--Sobic005G139800 Sobic009G209800--Sobic001G240400 Sobic009G209800--Sobic008G042250 Sobic009G209800--Sobic005G117801 Sobic002G056100 Sobic002G056100 Sobic009G209800--Sobic002G056100 Sobic005G221425 Sobic005G221425 Sobic009G209800--Sobic005G221425 Sobic002G410200 Sobic002G410200 Sobic009G209800--Sobic002G410200 Sobic005G110430--Sobic008G042250 Sobic005G110430--Sobic008G049701 Sobic005G110430--Sobic001G253100 Sobic008G157950 Sobic008G157950 Sobic005G110430--Sobic008G157950 Sobic005G110430--SobicK009900 Sobic001G287301 Sobic001G287301 Sobic005G110430--Sobic001G287301 Sobic004G164600 Sobic004G164600 Sobic005G110430--Sobic004G164600 Sobic005G110430--Sobic005G117801 Sobic005G110430--Sobic009G209800 Sobic008G042250--Sobic005G110430 Sobic008G042250--Sobic008G049701 Sobic008G042250--Sobic001G287301 Sobic008G042250--Sobic001G253100 Sobic008G042250--Sobic008G157950 Sobic008G042250--Sobic009G209800 Sobic008G042250--SobicK009900 Sobic008G042250--Sobic005G117801 Sobic008G042250--Sobic004G164600 Sobic004G076732--SobicK009900 Sobic004G076732--Sobic002G410200 Sobic004G076732--Sobic001G253100 Sobic008G009500 Sobic008G009500 Sobic004G076732--Sobic008G009500 Sobic007G073400 Sobic007G073400 Sobic004G076732--Sobic007G073400 Sobic004G076732--Sobic009G209800 Sobic004G076732--Sobic008G042250 Sobic004G076732--Sobic005G110430 Sobic004G212800 Sobic004G212800 Sobic004G076732--Sobic004G212800 Sobic001G240400--Sobic009G209800 Sobic001G240400--Sobic002G221200 Sobic001G240400--Sobic001G253100 Sobic001G240400--Sobic005G117801 Sobic001G240400--Sobic002G056100 Sobic001G240400--Sobic008G091900 Sobic001G240400--Sobic008G049701 Sobic001G305400 Sobic001G305400 Sobic001G240400--Sobic001G305400 Sobic001G240400--Sobic005G221425 Sobic008G091900--Sobic005G117801 Sobic008G091900--Sobic002G221200 Sobic008G091900--Sobic001G253100 Sobic008G091900--Sobic001G305400 Sobic003G031750 Sobic003G031750 Sobic008G091900--Sobic003G031750 Sobic008G091900--Sobic001G240400 Sobic002G062300 Sobic002G062300 Sobic008G091900--Sobic002G062300 Sobic008G091900--Sobic005G110430 Sobic005G212600 Sobic005G212600 Sobic008G091900--Sobic005G212600 Sobic008G049701--Sobic001G287301 Sobic008G049701--Sobic008G042250 Sobic008G049701--Sobic009G209800 Sobic008G049701--Sobic005G110430 Sobic008G049701--Sobic005G139800 Sobic008G049701--Sobic001G253100 Sobic008G049701--Sobic005G117801 Sobic008G049701--SobicK009900 Sobic008G049701--Sobic001G240400 SobicK009900--Sobic004G076732 SobicK009900--Sobic005G110430 SobicK009900--Sobic001G253100 SobicK009900--Sobic008G042250 SobicK009900--Sobic008G049701 SobicK009900--Sobic002G410200 SobicK009900--Sobic001G287301 SobicK009900--Sobic005G117801 SobicK009900--Sobic009G209800
Octagon: transcription factors


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