Gene annotation
Transcriptome id Sobic.K024000.1
Synonym Sb2002s002020
Functional annotation elongation factor Tu, putative, expressed
UniProt C6JSQ3 , A0A109ND19 , A0A109ND32
Pfam PF00009
Panther DB PTHR23115 PTHR23115:SF157
NCBI CDD -
KEGG Orthology K03231; elongation factor 1-alpha
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07930 : GTP binding Elongation factor Tu family protein
RAP-DB (Rice) LOC_Os03g08010.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a043311 , Zm00025a051236 , Zm00025a043337 , Zm00025a043313 , Zm00025a048393 , Zm00025a036927 , Zm00025a036925 , Zm00025a042244 , Zm00025a043309 , Zm00025a043304
Brachypodium PNS24237 , KQJ87649 , KQJ87648 , KQK12914 , KQK12915 , KQK12916 , KQK12917 , KQK12913 , KQK22190
Barley HORVU2Hr1G013680.6 , HORVU2Hr1G013680.4 , HORVU2Hr1G013680.5 , HORVU2Hr1G013680.2 , HORVU2Hr1G013680.3 , HORVU2Hr1G013680.1 , HORVU4Hr1G056830.2 , HORVU4Hr1G056830.3 , HORVU5Hr1G100200.4 , HORVU5Hr1G100200.5 , HORVU5Hr1G100200.2 , HORVU5Hr1G100200.3 , HORVU5Hr1G100200.1 , HORVU6Hr1G085370.1 , HORVU6Hr1G085370.2 , HORVU6Hr1G085370.4 , HORVU6Hr1G085370.7 , HORVU6Hr1G085370.6 , HORVU0Hr1G017020.1 , HORVU0Hr1G017020.4 , HORVU5Hr1G051280.1 , HORVU6Hr1G085320.1 , HORVU4Hr1G056740.8 , HORVU4Hr1G056740.2 , HORVU4Hr1G056740.1 , HORVU5Hr1G100700.3 , HORVU5Hr1G100700.2 , HORVU5Hr1G100700.1 , HORVU4Hr1G056740.5 , HORVU6Hr1G085320.2 , HORVU6Hr1G085320.3 , HORVU4Hr1G056740.6 , HORVU4Hr1G056740.4 , HORVU4Hr1G056820.4 , HORVU4Hr1G056820.2 , HORVU4Hr1G056820.1
Wheat TraesCS4B02G196800 , TraesCS4B02G196800 , TraesCS2D02G320500 , TraesCS4D02G197200 , TraesCS2A02G083000 , TraesCS2B02G097100 , TraesCS2B02G097300 , TraesCS2D02G320300 , TraesCS5A02G415600 , TraesCS5B02G418200 , TraesCS5B02G418100 , TraesCS2D02G080900 , TraesCS5D02G423300 , TraesCS5D02G423300 , TraesCS5D02G423300 , TraesCS4A02G107600 , TraesCS5D02G423400 , TraesCS2A02G083300 , TraesCS5A02G415400 , TraesCS4B02G196900 , TraesCS4B02G196900 , TraesCS4A02G107700 , TraesCS2D02G080800 , TraesCS4D02G197100
Populus PNS98617 , PNS98616 , PNS98618 , PNT17987 , PNT17989 , PNT17988 , PNT22659 , PNT22658 , PNT22657 , PNT22655 , PNT17990 , PNT17991 , PNT17992 , PNT17993 , PNT31383 , PNT31382 , PNT22664 , PNT18006 , PNT18005


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G009500 pentatricopeptide, putative, expressed -
2 Sobic.009G113600 - -
3 Sobic.002G062300 expressed protein -
4 Sobic.007G059300 - -
5 Sobic.009G209800 OsFBX49 - F-box domain containing protein, expressed -
6 Sobic.003G031750 - -
7 Sobic.001G253100 3-5 exonuclease family protein, putative, expressed -
8 Sobic.008G079100 - -
9 Sobic.002G221200 zinc knuckle domain containing protein, expressed -
10 Sobic.008G031350 - -
11 Sobic.005G221425 - -
12 Sobic.008G042250 - -
13 Sobic.001G240400 ENT domain containing protein, expressed -
14 Sobic.009G196700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.005G212600 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
17 Sobic.002G056100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine Rich Repeat family protein, expressed -
18 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
19 Sobic.003G089650 - -
20 Sobic.010G146200 homeobox associated leucine zipper, putative, expressed -


Gene co-expression network
sample SobicK024000 SobicK024000 Sobic008G009500 Sobic008G009500 SobicK024000--Sobic008G009500 Sobic009G113600 Sobic009G113600 SobicK024000--Sobic009G113600 Sobic002G062300 Sobic002G062300 SobicK024000--Sobic002G062300 Sobic007G059300 Sobic007G059300 SobicK024000--Sobic007G059300 Sobic009G209800 Sobic009G209800 SobicK024000--Sobic009G209800 Sobic003G031750 Sobic003G031750 SobicK024000--Sobic003G031750 Sobic001G253100 Sobic001G253100 SobicK024000--Sobic001G253100 Sobic008G079100 Sobic008G079100 SobicK024000--Sobic008G079100 Sobic002G221200 Sobic002G221200 SobicK024000--Sobic002G221200 Sobic008G009500--SobicK024000 Sobic004G076732 Sobic004G076732 Sobic008G009500--Sobic004G076732 Sobic008G009500--Sobic002G062300 Sobic008G009500--Sobic009G113600 Sobic008G009500--Sobic001G253100 Sobic007G073400 Sobic007G073400 Sobic008G009500--Sobic007G073400 Sobic008G009500--Sobic009G209800 Sobic008G031350 Sobic008G031350 Sobic008G009500--Sobic008G031350 Sobic005G221425 Sobic005G221425 Sobic008G009500--Sobic005G221425 Sobic009G113600--Sobic002G062300 Sobic009G113600--Sobic007G059300 Sobic009G113600--SobicK024000 Sobic009G196700 Sobic009G196700 Sobic009G113600--Sobic009G196700 Sobic009G113600--Sobic008G009500 Sobic008G108900 Sobic008G108900 Sobic009G113600--Sobic008G108900 Sobic009G113600--Sobic003G031750 Sobic009G113600--Sobic008G031350 Sobic010G146200 Sobic010G146200 Sobic009G113600--Sobic010G146200 Sobic002G062300--Sobic009G113600 Sobic002G062300--Sobic007G059300 Sobic002G062300--SobicK024000 Sobic005G212600 Sobic005G212600 Sobic002G062300--Sobic005G212600 Sobic002G062300--Sobic003G031750 Sobic002G062300--Sobic008G009500 Sobic002G062300--Sobic008G108900 Sobic002G062300--Sobic009G196700 Sobic002G062300--Sobic001G253100 Sobic007G059300--Sobic002G062300 Sobic007G059300--Sobic009G113600 Sobic007G059300--Sobic009G196700 Sobic007G059300--Sobic003G031750 Sobic007G059300--SobicK024000 Sobic007G059300--Sobic008G108900 Sobic009G026400 Sobic009G026400 Sobic007G059300--Sobic009G026400 Sobic006G132200 Sobic006G132200 Sobic007G059300--Sobic006G132200 Sobic002G051400 Sobic002G051400 Sobic007G059300--Sobic002G051400 Sobic008G049701 Sobic008G049701 Sobic009G209800--Sobic008G049701 Sobic009G209800--Sobic001G253100 Sobic005G139800 Sobic005G139800 Sobic009G209800--Sobic005G139800 Sobic001G240400 Sobic001G240400 Sobic009G209800--Sobic001G240400 Sobic008G042250 Sobic008G042250 Sobic009G209800--Sobic008G042250 Sobic005G117801 Sobic005G117801 Sobic009G209800--Sobic005G117801 Sobic002G056100 Sobic002G056100 Sobic009G209800--Sobic002G056100 Sobic009G209800--Sobic005G221425 Sobic002G410200 Sobic002G410200 Sobic009G209800--Sobic002G410200 Sobic003G031750--Sobic002G062300 Sobic003G031750--Sobic007G059300 Sobic008G091900 Sobic008G091900 Sobic003G031750--Sobic008G091900 Sobic003G031750--Sobic009G113600 Sobic003G031750--SobicK024000 Sobic003G031750--Sobic002G221200 Sobic003G031750--Sobic009G196700 Sobic003G031750--Sobic001G253100 Sobic003G031750--Sobic008G079100 Sobic001G253100--Sobic005G117801 Sobic001G253100--Sobic009G209800 Sobic005G110430 Sobic005G110430 Sobic001G253100--Sobic005G110430 Sobic001G253100--Sobic008G042250 Sobic001G253100--Sobic004G076732 Sobic001G253100--Sobic001G240400 Sobic001G253100--Sobic008G091900 Sobic001G253100--Sobic008G049701 SobicK009900 SobicK009900 Sobic001G253100--SobicK009900 Sobic008G079100--Sobic008G042250 Sobic008G079100--Sobic009G209800 Sobic008G079100--SobicK024000 Sobic008G079100--Sobic003G031750 Sobic008G079100--Sobic001G253100 Sobic008G079100--Sobic005G110430 Sobic008G079100--Sobic008G049701 Sobic008G079100--Sobic002G062300 Sobic008G079100--Sobic008G009500 Sobic001G305400 Sobic001G305400 Sobic002G221200--Sobic001G305400 Sobic002G221200--Sobic008G091900 Sobic002G221200--Sobic001G240400 Sobic002G221200--Sobic005G117801 Sobic002G221200--Sobic001G253100 Sobic002G221200--Sobic009G209800 Sobic008G036500 Sobic008G036500 Sobic002G221200--Sobic008G036500 Sobic002G221200--Sobic002G062300 Sobic002G221200--Sobic003G031750
Octagon: transcription factors


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