Gene annotation
Transcriptome id Sobic.003G336800.1
Synonym Sb03g038100
Functional annotation expressed protein
UniProt C5XN92
Pfam -
Panther DB PTHR31949 PTHR31949:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08670 : -
RAP-DB (Rice) LOC_Os05g40220.2 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a039777 , Zm00025a027073 , Zm00025a037796
Brachypodium KQK10333
Barley HORVU3Hr1G080730.4 , HORVU3Hr1G080730.3 , HORVU3Hr1G080730.2 , HORVU3Hr1G080730.1 , HORVU3Hr1G080730.5
Wheat -
Populus -


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cDNA sequences
Sobic.003G336800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G088400 GTPase-activating protein, putative, expressed -
2 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
3 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
4 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
5 Sobic.001G296500 ARABIDILLO-1, putative, expressed -
6 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
7 Sobic.010G199800 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
8 Sobic.006G128800 expressed protein -
9 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
10 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
11 Sobic.003G205501 - -
12 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
13 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
14 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.002G177400 expressed protein -
16 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
17 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
18 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
19 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
20 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic003G336800 Sobic003G336800 Sobic004G088400 Sobic004G088400 Sobic003G336800--Sobic004G088400 Sobic008G129700 Sobic008G129700 Sobic003G336800--Sobic008G129700 Sobic002G061400 Sobic002G061400 Sobic003G336800--Sobic002G061400 Sobic010G174800 Sobic010G174800 Sobic003G336800--Sobic010G174800 Sobic001G296500 Sobic001G296500 Sobic003G336800--Sobic001G296500 Sobic010G202600 Sobic010G202600 Sobic003G336800--Sobic010G202600 Sobic010G199800 Sobic010G199800 Sobic003G336800--Sobic010G199800 Sobic006G128800 Sobic006G128800 Sobic003G336800--Sobic006G128800 Sobic007G008800 Sobic007G008800 Sobic003G336800--Sobic007G008800 Sobic002G177400 Sobic002G177400 Sobic004G088400--Sobic002G177400 Sobic004G088400--Sobic007G008800 Sobic004G088400--Sobic003G336800 Sobic008G117200 Sobic008G117200 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic003G346000 Sobic003G346000 Sobic004G088400--Sobic003G346000 Sobic004G088400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic004G088400--Sobic007G116400 Sobic009G030300 Sobic009G030300 Sobic004G088400--Sobic009G030300 Sobic008G129700--Sobic003G336800 Sobic004G061900 Sobic004G061900 Sobic008G129700--Sobic004G061900 Sobic008G129700--Sobic002G061400 Sobic008G129700--Sobic008G117200 Sobic008G129700--Sobic002G177400 Sobic007G185900 Sobic007G185900 Sobic008G129700--Sobic007G185900 Sobic008G078100 Sobic008G078100 Sobic008G129700--Sobic008G078100 Sobic003G248500 Sobic003G248500 Sobic008G129700--Sobic003G248500 Sobic008G129700--Sobic004G088400 Sobic002G061400--Sobic008G129700 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic002G061400--Sobic010G199800 Sobic008G034600 Sobic008G034600 Sobic002G061400--Sobic008G034600 Sobic008G116500 Sobic008G116500 Sobic002G061400--Sobic008G116500 Sobic002G297800 Sobic002G297800 Sobic002G061400--Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G061400--Sobic002G049000 Sobic002G061400--Sobic008G117200 Sobic010G174800--Sobic003G248500 Sobic010G174800--Sobic006G128800 Sobic003G185200 Sobic003G185200 Sobic010G174800--Sobic003G185200 Sobic003G359300 Sobic003G359300 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic010G174800--Sobic003G336800 Sobic004G263900 Sobic004G263900 Sobic010G174800--Sobic004G263900 Sobic001G390500 Sobic001G390500 Sobic010G174800--Sobic001G390500 Sobic001G028400 Sobic001G028400 Sobic010G174800--Sobic001G028400 Sobic003G401000 Sobic003G401000 Sobic001G296500--Sobic003G401000 Sobic001G094000 Sobic001G094000 Sobic001G296500--Sobic001G094000 Sobic003G084900 Sobic003G084900 Sobic001G296500--Sobic003G084900 Sobic001G296500--Sobic003G336800 Sobic010G166000 Sobic010G166000 Sobic001G296500--Sobic010G166000 Sobic004G031700 Sobic004G031700 Sobic001G296500--Sobic004G031700 Sobic002G158700 Sobic002G158700 Sobic001G296500--Sobic002G158700 Sobic001G514000 Sobic001G514000 Sobic001G296500--Sobic001G514000 Sobic002G157300 Sobic002G157300 Sobic001G296500--Sobic002G157300 Sobic007G111100 Sobic007G111100 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic001G131800 Sobic001G131800 Sobic010G202600--Sobic001G131800 Sobic010G202600--Sobic003G185200 Sobic003G205501 Sobic003G205501 Sobic010G202600--Sobic003G205501 Sobic006G267300 Sobic006G267300 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic008G174300 Sobic008G174300 Sobic010G202600--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic010G202600--Sobic003G081000 Sobic010G199800--Sobic002G061400 Sobic010G199800--Sobic003G336800 Sobic010G199800--Sobic010G174800 Sobic010G199800--Sobic006G130200 Sobic001G425000 Sobic001G425000 Sobic010G199800--Sobic001G425000 Sobic002G197100 Sobic002G197100 Sobic010G199800--Sobic002G197100 Sobic004G349900 Sobic004G349900 Sobic010G199800--Sobic004G349900 Sobic010G199800--Sobic006G128800 Sobic001G202266 Sobic001G202266 Sobic010G199800--Sobic001G202266 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic003G261300 Sobic003G261300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500 Sobic007G008800--Sobic003G026300 Sobic007G008800--Sobic004G088400 SobicK009900 SobicK009900 Sobic007G008800--SobicK009900 Sobic007G008800--Sobic002G177400 Sobic004G076732 Sobic004G076732 Sobic007G008800--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic007G008800--Sobic002G410200 Sobic001G024200 Sobic001G024200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801
Octagon: transcription factors


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