Gene annotation
Transcriptome id Sobic.010G202600.1
Synonym Sb10g025050
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YKH3 , A0A109ND47
Pfam PF12906
Panther DB PTHR13145
NCBI CDD -
KEGG Orthology K10661; MARCH6, E3 ubiquitin-protein ligase MARCH6
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G34100 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g43210.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051422 , Zm00025a042082
Brachypodium KQK16745 , PNT75333
Barley HORVU7Hr1G116420.3 , HORVU7Hr1G116420.2 , HORVU7Hr1G116420.1 , HORVU7Hr1G116420.5 , HORVU7Hr1G116420.4
Wheat TraesCS7B02G442100 , TraesCS7B02G442100 , TraesCS7D02G513500 , TraesCS7D02G513500 , TraesCS7A02G524600 , TraesCS7A02G524600
Populus PNT57503 , PNT57506 , PNT57505


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cDNA sequences
Sobic.010G202600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
2 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
3 Sobic.001G131800 expressed protein K15186: ELL-associated factor
4 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
5 Sobic.003G205501 - -
6 Sobic.006G267300 expressed protein -
7 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
8 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
9 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
10 Sobic.003G336800 expressed protein -
11 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
13 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
14 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
15 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
16 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
17 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
18 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
19 Sobic.009G198100 expressed protein -
20 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic010G202600 Sobic010G202600 Sobic007G111100 Sobic007G111100 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic001G131800 Sobic001G131800 Sobic010G202600--Sobic001G131800 Sobic003G185200 Sobic003G185200 Sobic010G202600--Sobic003G185200 Sobic003G205501 Sobic003G205501 Sobic010G202600--Sobic003G205501 Sobic006G267300 Sobic006G267300 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic008G174300 Sobic008G174300 Sobic010G202600--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic010G202600--Sobic003G081000 Sobic007G111100--Sobic010G202600 Sobic002G262700 Sobic002G262700 Sobic007G111100--Sobic002G262700 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic004G068500 Sobic004G068500 Sobic007G111100--Sobic004G068500 Sobic007G111100--Sobic001G131800 Sobic007G111100--Sobic003G205501 Sobic001G469800--Sobic010G202600 Sobic006G248500 Sobic006G248500 Sobic001G469800--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic001G469800--Sobic002G259800 Sobic001G395100 Sobic001G395100 Sobic001G469800--Sobic001G395100 Sobic003G433500 Sobic003G433500 Sobic001G469800--Sobic003G433500 Sobic008G129700 Sobic008G129700 Sobic001G469800--Sobic008G129700 Sobic001G469800--Sobic007G111100 Sobic001G469800--Sobic006G267300 Sobic008G127400 Sobic008G127400 Sobic001G469800--Sobic008G127400 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic001G131800--Sobic010G202600 Sobic010G033400 Sobic010G033400 Sobic001G131800--Sobic010G033400 Sobic009G198100 Sobic009G198100 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G107500 Sobic001G107500 Sobic001G131800--Sobic001G107500 Sobic001G131800--Sobic007G111100 Sobic003G359300 Sobic003G359300 Sobic001G131800--Sobic003G359300 Sobic002G365100 Sobic002G365100 Sobic003G185200--Sobic002G365100 Sobic010G174800 Sobic010G174800 Sobic003G185200--Sobic010G174800 Sobic003G248500 Sobic003G248500 Sobic003G185200--Sobic003G248500 Sobic003G185200--Sobic010G202600 Sobic003G261300 Sobic003G261300 Sobic003G185200--Sobic003G261300 Sobic010G000700 Sobic010G000700 Sobic003G185200--Sobic010G000700 Sobic006G128800 Sobic006G128800 Sobic003G185200--Sobic006G128800 Sobic004G263900 Sobic004G263900 Sobic003G185200--Sobic004G263900 Sobic003G336800 Sobic003G336800 Sobic003G185200--Sobic003G336800 Sobic001G408700 Sobic001G408700 Sobic003G205501--Sobic001G408700 Sobic003G205501--Sobic006G128800 Sobic004G345700 Sobic004G345700 Sobic003G205501--Sobic004G345700 Sobic003G205501--Sobic006G267300 Sobic003G205501--Sobic010G202600 Sobic010G245000 Sobic010G245000 Sobic003G205501--Sobic010G245000 Sobic003G205501--Sobic008G127400 Sobic008G058800 Sobic008G058800 Sobic003G205501--Sobic008G058800 Sobic003G205501--Sobic003G248500 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic006G267300--Sobic003G205501 Sobic006G267300--Sobic001G408700 Sobic009G195200 Sobic009G195200 Sobic006G267300--Sobic009G195200 Sobic007G118200 Sobic007G118200 Sobic006G267300--Sobic007G118200 Sobic006G267300--Sobic010G202600 Sobic006G267300--Sobic003G433500 Sobic006G267300--Sobic008G127400 Sobic004G031700 Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic008G174300--Sobic003G359300 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100
Octagon: transcription factors


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