Gene annotation
Transcriptome id Sobic.002G262700.1
Synonym Sb02g029740
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X5D1
Pfam PF00076
Panther DB PTHR13952 PTHR13952:SF6
NCBI CDD KOG0113; U1 small nuclear ribonucleoprotein (RRM superfamily)
KEGG Orthology K13155; U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G43370 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os09g33870.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047640
Brachypodium KQJ90998
Barley HORVU5Hr1G078170.16 , HORVU5Hr1G078170.17 , HORVU5Hr1G078170.30 , HORVU5Hr1G078170.12 , HORVU5Hr1G078170.13 , HORVU5Hr1G078170.10 , HORVU5Hr1G078170.4 , HORVU5Hr1G078170.5 , HORVU5Hr1G078170.6 , HORVU5Hr1G078170.7 , HORVU5Hr1G078170.1 , HORVU5Hr1G078170.3 , HORVU5Hr1G078170.27 , HORVU5Hr1G078170.26 , HORVU5Hr1G078170.25 , HORVU5Hr1G078170.24 , HORVU5Hr1G078170.23 , HORVU5Hr1G078170.20
Wheat TraesCS5A02G298000 , TraesCS5D02G304800 , TraesCS5B02G297000 , TraesCS5B02G297000
Populus -


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cDNA sequences
Sobic.002G262700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
2 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
3 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
4 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
5 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
6 Sobic.004G068500 CUE domain containing protein, expressed -
7 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
8 Sobic.007G026000 ATBET9, putative, expressed -
9 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
10 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
11 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
12 Sobic.003G205501 - -
13 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
14 Sobic.007G027700 expressed protein -
15 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
16 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
17 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
18 Sobic.009G137100 bZIP transcription factor domain containing protein, expressed -
19 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
20 Sobic.007G041500 diacylglycerol kinase, putative, expressed -


Gene co-expression network
sample Sobic002G262700 Sobic002G262700 Sobic007G111100 Sobic007G111100 Sobic002G262700--Sobic007G111100 Sobic010G202600 Sobic010G202600 Sobic002G262700--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic002G262700--Sobic009G074700 Sobic007G119200 Sobic007G119200 Sobic002G262700--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic002G262700--Sobic007G046200 Sobic004G068500 Sobic004G068500 Sobic002G262700--Sobic004G068500 Sobic008G127400 Sobic008G127400 Sobic002G262700--Sobic008G127400 Sobic007G026000 Sobic007G026000 Sobic002G262700--Sobic007G026000 Sobic010G055800 Sobic010G055800 Sobic002G262700--Sobic010G055800 Sobic007G111100--Sobic010G202600 Sobic007G111100--Sobic002G262700 Sobic006G267300 Sobic006G267300 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic010G202600--Sobic001G131800 Sobic003G185200 Sobic003G185200 Sobic010G202600--Sobic003G185200 Sobic010G202600--Sobic003G205501 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic008G174300 Sobic008G174300 Sobic010G202600--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic010G202600--Sobic003G081000 Sobic001G246500 Sobic001G246500 Sobic009G074700--Sobic001G246500 Sobic009G074700--Sobic010G202600 Sobic010G278600 Sobic010G278600 Sobic009G074700--Sobic010G278600 Sobic006G180700 Sobic006G180700 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G000400 Sobic009G000400 Sobic009G074700--Sobic009G000400 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic002G034600 Sobic002G034600 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic001G517500 Sobic001G517500 Sobic007G046200--Sobic001G517500 Sobic001G473600 Sobic001G473600 Sobic007G046200--Sobic001G473600 Sobic007G046200--Sobic002G034600 Sobic007G046200--Sobic007G119200 Sobic007G046200--Sobic007G111100 Sobic003G355000 Sobic003G355000 Sobic007G046200--Sobic003G355000 Sobic007G046200--Sobic010G202600 Sobic007G046200--Sobic001G109800 Sobic007G046200--Sobic003G081000 Sobic004G068500--Sobic007G111100 Sobic004G068500--Sobic002G262700 Sobic001G005600 Sobic001G005600 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic004G068500--Sobic007G046200 Sobic001G042200 Sobic001G042200 Sobic004G068500--Sobic001G042200 Sobic007G042900 Sobic007G042900 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic004G068500--Sobic001G517500 Sobic007G027700 Sobic007G027700 Sobic008G127400--Sobic007G027700 Sobic008G127400--Sobic006G267300 Sobic008G127400--Sobic003G205501 Sobic006G065800 Sobic006G065800 Sobic008G127400--Sobic006G065800 Sobic004G246700 Sobic004G246700 Sobic008G127400--Sobic004G246700 Sobic008G058800 Sobic008G058800 Sobic008G127400--Sobic008G058800 Sobic002G423200 Sobic002G423200 Sobic008G127400--Sobic002G423200 Sobic006G248500 Sobic006G248500 Sobic008G127400--Sobic006G248500 Sobic010G033400 Sobic010G033400 Sobic008G127400--Sobic010G033400 Sobic007G026000--Sobic008G153000 Sobic006G046700 Sobic006G046700 Sobic007G026000--Sobic006G046700 Sobic005G059100 Sobic005G059100 Sobic007G026000--Sobic005G059100 Sobic003G445400 Sobic003G445400 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic002G153700 Sobic002G153700 Sobic007G026000--Sobic002G153700 Sobic001G206100 Sobic001G206100 Sobic007G026000--Sobic001G206100 Sobic006G013500 Sobic006G013500 Sobic007G026000--Sobic006G013500 Sobic004G031700 Sobic004G031700 Sobic007G026000--Sobic004G031700 Sobic010G055800--Sobic002G262700 Sobic010G055800--Sobic001G042200 Sobic004G345400 Sobic004G345400 Sobic010G055800--Sobic004G345400 Sobic004G180900 Sobic004G180900 Sobic010G055800--Sobic004G180900 Sobic010G187600 Sobic010G187600 Sobic010G055800--Sobic010G187600 Sobic003G123000 Sobic003G123000 Sobic010G055800--Sobic003G123000 Sobic009G092400 Sobic009G092400 Sobic010G055800--Sobic009G092400 Sobic006G186400 Sobic006G186400 Sobic010G055800--Sobic006G186400 Sobic010G055800--Sobic004G068500
Octagon: transcription factors


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