Gene annotation
Transcriptome id Sobic.009G036200.1,Sobic.009G036200.2
Synonym CHE1, BSH, Sb09g003070
Functional annotation SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed
UniProt A0A1B6P6H8 , C5YZL7 , A0A097PLV5
Pfam PF04855
Panther DB PTHR10019
NCBI CDD -
KEGG Orthology K11648; SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Gene Ontology GO:0006338; chromatin remodeling GO:0000228nuclear chromosome


Orthologs (automatic annotation)
TAIR AT3G17590 : transcription regulatory protein SNF5, putative (BSH)
RAP-DB (Rice) LOC_Os02g49190.1 : SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed
MaizeGDB (Corn) Zm00025a038130
Brachypodium KQK07641
Barley HORVU1Hr1G017710.2 , HORVU1Hr1G017710.1 , HORVU1Hr1G017710.6 , HORVU1Hr1G017710.5 , HORVU1Hr1G017710.4
Wheat TraesCS1D02G084000 , TraesCS1D02G084000 , TraesCS1A02G082600 , TraesCS1B02G100200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
2 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
3 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
4 Sobic.003G212900 zinc ion binding protein, putative, expressed -
5 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
6 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
7 Sobic.004G346100 expressed protein -
8 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
9 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
10 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.003G214300 expressed protein -
12 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
13 Sobic.006G248500 expressed protein -
14 Sobic.003G114500 zinc knuckle family protein, putative, expressed -
15 Sobic.004G036300 marker Xucw84, putative, expressed -
16 Sobic.001G216100 expressed protein -
17 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
18 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
19 Sobic.001G215400 OsFBX387 - F-box domain containing protein, expressed -
20 Sobic.006G120800 transglutaminase, putative, expressed -


Gene co-expression network
sample Sobic009G036200 Sobic009G036200 Sobic007G111100 Sobic007G111100 Sobic009G036200--Sobic007G111100 Sobic001G395100 Sobic001G395100 Sobic009G036200--Sobic001G395100 Sobic009G258400 Sobic009G258400 Sobic009G036200--Sobic009G258400 Sobic003G212900 Sobic003G212900 Sobic009G036200--Sobic003G212900 Sobic002G262700 Sobic002G262700 Sobic009G036200--Sobic002G262700 Sobic006G121300 Sobic006G121300 Sobic009G036200--Sobic006G121300 Sobic004G346100 Sobic004G346100 Sobic009G036200--Sobic004G346100 Sobic001G042200 Sobic001G042200 Sobic009G036200--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic009G036200--Sobic004G309900 Sobic010G202600 Sobic010G202600 Sobic007G111100--Sobic010G202600 Sobic007G111100--Sobic002G262700 Sobic006G267300 Sobic006G267300 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic004G068500 Sobic004G068500 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G395100--Sobic001G042200 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic010G077500 Sobic010G077500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic003G212900--Sobic001G042200 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic002G262700--Sobic007G111100 Sobic002G262700--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic002G262700--Sobic009G074700 Sobic007G119200 Sobic007G119200 Sobic002G262700--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic002G262700--Sobic007G046200 Sobic002G262700--Sobic004G068500 Sobic008G127400 Sobic008G127400 Sobic002G262700--Sobic008G127400 Sobic007G026000 Sobic007G026000 Sobic002G262700--Sobic007G026000 Sobic010G055800 Sobic010G055800 Sobic002G262700--Sobic010G055800 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic005G160400 Sobic005G160400 Sobic006G121300--Sobic005G160400 Sobic004G346100--Sobic001G168900 Sobic009G058500 Sobic009G058500 Sobic004G346100--Sobic009G058500 Sobic004G346100--Sobic009G036200 Sobic003G417900 Sobic003G417900 Sobic004G346100--Sobic003G417900 Sobic004G346100--Sobic002G077900 Sobic004G036300 Sobic004G036300 Sobic004G346100--Sobic004G036300 Sobic009G143800 Sobic009G143800 Sobic004G346100--Sobic009G143800 Sobic004G346100--Sobic009G258400 Sobic004G307500 Sobic004G307500 Sobic004G346100--Sobic004G307500 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200
Octagon: transcription factors


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