Gene annotation
Transcriptome id Sobic.004G036300.1
Synonym ROS3, Sb04g003130
Functional annotation marker Xucw84, putative, expressed
UniProt C5XUI8
Pfam PF14259
Panther DB PTHR23099 PTHR23099:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58130 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g04560.1 : marker Xucw84, putative, expressed
MaizeGDB (Corn) Zm00025a035026
Brachypodium KQJ93272
Barley HORVU2Hr1G039040.1 , HORVU5Hr1G083300.1 , HORVU3Hr1G075730.1 , HORVU2Hr1G013350.1 , HORVU1Hr1G048010.1
Wheat TraesCS6D02G096800 , TraesCS6B02G137100 , TraesCS6A02G108600
Populus -


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cDNA sequences
Sobic.004G036300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G041300 expressed protein -
2 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
3 Sobic.004G346100 expressed protein -
4 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
5 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
6 Sobic.009G137700 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
7 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
8 Sobic.003G114500 zinc knuckle family protein, putative, expressed -
9 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
10 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
11 Sobic.001G215400 OsFBX387 - F-box domain containing protein, expressed -
12 Sobic.009G137200 DIP1, putative, expressed -
13 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
14 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
15 Sobic.005G072400 expressed protein -
16 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.008G073000 expressed protein -
18 Sobic.001G371000 GTPase of unknown function domain containing protein, putative, expressed K14537: NUG2, nuclear GTP-binding protein
19 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
20 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic004G036300 Sobic004G036300 Sobic007G041300 Sobic007G041300 Sobic004G036300--Sobic007G041300 Sobic002G159200 Sobic002G159200 Sobic004G036300--Sobic002G159200 Sobic004G346100 Sobic004G346100 Sobic004G036300--Sobic004G346100 Sobic009G036200 Sobic009G036200 Sobic004G036300--Sobic009G036200 Sobic003G442000 Sobic003G442000 Sobic004G036300--Sobic003G442000 Sobic009G137700 Sobic009G137700 Sobic004G036300--Sobic009G137700 Sobic004G088200 Sobic004G088200 Sobic004G036300--Sobic004G088200 Sobic003G114500 Sobic003G114500 Sobic004G036300--Sobic003G114500 Sobic007G046200 Sobic007G046200 Sobic004G036300--Sobic007G046200 Sobic007G102700 Sobic007G102700 Sobic007G041300--Sobic007G102700 Sobic001G473600 Sobic001G473600 Sobic007G041300--Sobic001G473600 Sobic007G191700 Sobic007G191700 Sobic007G041300--Sobic007G191700 Sobic007G041300--Sobic004G036300 Sobic007G041300--Sobic009G137700 Sobic003G438900 Sobic003G438900 Sobic007G041300--Sobic003G438900 Sobic007G041300--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic007G041300--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic007G041300--Sobic003G427100 Sobic007G043500 Sobic007G043500 Sobic002G159200--Sobic007G043500 Sobic009G000500 Sobic009G000500 Sobic002G159200--Sobic009G000500 Sobic002G067800 Sobic002G067800 Sobic002G159200--Sobic002G067800 Sobic003G307000 Sobic003G307000 Sobic002G159200--Sobic003G307000 Sobic005G059100 Sobic005G059100 Sobic002G159200--Sobic005G059100 Sobic001G405300 Sobic001G405300 Sobic002G159200--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic002G159200--Sobic006G046700 Sobic003G355000 Sobic003G355000 Sobic002G159200--Sobic003G355000 Sobic007G026000 Sobic007G026000 Sobic002G159200--Sobic007G026000 Sobic001G168900 Sobic001G168900 Sobic004G346100--Sobic001G168900 Sobic009G058500 Sobic009G058500 Sobic004G346100--Sobic009G058500 Sobic004G346100--Sobic009G036200 Sobic003G417900 Sobic003G417900 Sobic004G346100--Sobic003G417900 Sobic002G077900 Sobic002G077900 Sobic004G346100--Sobic002G077900 Sobic004G346100--Sobic004G036300 Sobic009G143800 Sobic009G143800 Sobic004G346100--Sobic009G143800 Sobic009G258400 Sobic009G258400 Sobic004G346100--Sobic009G258400 Sobic004G307500 Sobic004G307500 Sobic004G346100--Sobic004G307500 Sobic007G111100 Sobic007G111100 Sobic009G036200--Sobic007G111100 Sobic001G395100 Sobic001G395100 Sobic009G036200--Sobic001G395100 Sobic009G036200--Sobic009G258400 Sobic003G212900 Sobic003G212900 Sobic009G036200--Sobic003G212900 Sobic002G262700 Sobic002G262700 Sobic009G036200--Sobic002G262700 Sobic006G121300 Sobic006G121300 Sobic009G036200--Sobic006G121300 Sobic009G036200--Sobic004G346100 Sobic001G042200 Sobic001G042200 Sobic009G036200--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic009G036200--Sobic004G309900 Sobic005G009200 Sobic005G009200 Sobic003G442000--Sobic005G009200 Sobic005G015900 Sobic005G015900 Sobic003G442000--Sobic005G015900 Sobic004G018300 Sobic004G018300 Sobic003G442000--Sobic004G018300 Sobic003G258900 Sobic003G258900 Sobic003G442000--Sobic003G258900 Sobic010G202600 Sobic010G202600 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic002G158700 Sobic002G158700 Sobic003G442000--Sobic002G158700 Sobic001G090400 Sobic001G090400 Sobic003G442000--Sobic001G090400 Sobic009G137700--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic009G137700--Sobic010G095700 Sobic009G137700--Sobic007G111100 Sobic009G137700--Sobic009G258400 Sobic009G137700--Sobic002G262700 Sobic009G137700--Sobic004G036300 Sobic009G137700--Sobic007G102700 Sobic009G137700--Sobic009G036200 Sobic004G068500 Sobic004G068500 Sobic009G137700--Sobic004G068500 Sobic003G394300 Sobic003G394300 Sobic004G088200--Sobic003G394300 Sobic010G167900 Sobic010G167900 Sobic004G088200--Sobic010G167900 Sobic005G207500 Sobic005G207500 Sobic004G088200--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic004G088200--Sobic006G096900 Sobic002G153700 Sobic002G153700 Sobic004G088200--Sobic002G153700 Sobic007G212300 Sobic007G212300 Sobic004G088200--Sobic007G212300 Sobic001G311500 Sobic001G311500 Sobic004G088200--Sobic001G311500 Sobic004G088200--Sobic003G307000 Sobic005G008800 Sobic005G008800 Sobic004G088200--Sobic005G008800 Sobic009G151200 Sobic009G151200 Sobic003G114500--Sobic009G151200 Sobic002G383300 Sobic002G383300 Sobic003G114500--Sobic002G383300 Sobic006G161000 Sobic006G161000 Sobic003G114500--Sobic006G161000 Sobic010G077500 Sobic010G077500 Sobic003G114500--Sobic010G077500 Sobic004G049700 Sobic004G049700 Sobic003G114500--Sobic004G049700 Sobic001G424600 Sobic001G424600 Sobic003G114500--Sobic001G424600 Sobic007G056500 Sobic007G056500 Sobic003G114500--Sobic007G056500 Sobic007G187600 Sobic007G187600 Sobic003G114500--Sobic007G187600 Sobic006G049100 Sobic006G049100 Sobic003G114500--Sobic006G049100 Sobic001G517500 Sobic001G517500 Sobic007G046200--Sobic001G517500 Sobic007G046200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic007G046200--Sobic002G034600 Sobic007G119200 Sobic007G119200 Sobic007G046200--Sobic007G119200 Sobic007G046200--Sobic007G111100 Sobic007G046200--Sobic003G355000 Sobic007G046200--Sobic010G202600 Sobic001G109800 Sobic001G109800 Sobic007G046200--Sobic001G109800 Sobic003G081000 Sobic003G081000 Sobic007G046200--Sobic003G081000
Octagon: transcription factors


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