Gene annotation
Transcriptome id Sobic.002G159200.3,Sobic.002G159200.2,Sobic.002G159200.4
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QBM3
Pfam PF00400
Panther DB PTHR22874
NCBI CDD -
KEGG Orthology K17985; activating molecule in BECN1-regulated autophagy protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G43930 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g18820.1,LOC_Os02g18820.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023007 , Zm00025a012101 , Zm00025a013673
Brachypodium KQK01918 , KQK01916 , KQK01917 , KQK01914 , KQK01915 , PNT69632
Barley HORVU5Hr1G123080.22 , HORVU5Hr1G123080.23 , HORVU5Hr1G123080.20 , HORVU5Hr1G123080.21 , HORVU5Hr1G123080.15 , HORVU5Hr1G123080.11 , HORVU5Hr1G123080.18 , HORVU5Hr1G123080.16 , HORVU5Hr1G123080.14 , HORVU5Hr1G123080.12 , HORVU5Hr1G123080.17 , HORVU5Hr1G123080.13 , HORVU5Hr1G123080.7 , HORVU5Hr1G123080.6 , HORVU5Hr1G123080.5 , HORVU5Hr1G123080.4 , HORVU5Hr1G123080.3 , HORVU5Hr1G123080.2 , HORVU5Hr1G123080.1 , HORVU5Hr1G123080.8
Wheat TraesCS5B02G539500 , TraesCS5B02G539500 , TraesCS5B02G539500 , TraesCS4A02G326800 , TraesCS4A02G326800 , TraesCS4A02G326800
Populus -


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cDNA sequences
Sobic.002G159200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G043500 DNA topoisomerase 1, putative, expressed K03163: DNA topoisomerase I
2 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
3 Sobic.002G067800 - -
4 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
5 Sobic.005G059100 bromodomain domain containing protein, expressed -
6 Sobic.001G405300 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed -
7 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
8 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
9 Sobic.007G026000 ATBET9, putative, expressed -
10 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
11 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
12 Sobic.004G031700 expressed protein -
13 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
15 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
16 Sobic.001G206100 expressed protein -
17 Sobic.004G036300 marker Xucw84, putative, expressed -
18 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
19 Sobic.008G073000 expressed protein -
20 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1


Gene co-expression network
sample Sobic002G159200 Sobic002G159200 Sobic007G043500 Sobic007G043500 Sobic002G159200--Sobic007G043500 Sobic009G000500 Sobic009G000500 Sobic002G159200--Sobic009G000500 Sobic002G067800 Sobic002G067800 Sobic002G159200--Sobic002G067800 Sobic003G307000 Sobic003G307000 Sobic002G159200--Sobic003G307000 Sobic005G059100 Sobic005G059100 Sobic002G159200--Sobic005G059100 Sobic001G405300 Sobic001G405300 Sobic002G159200--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic002G159200--Sobic006G046700 Sobic003G355000 Sobic003G355000 Sobic002G159200--Sobic003G355000 Sobic007G026000 Sobic007G026000 Sobic002G159200--Sobic007G026000 Sobic007G043500--Sobic005G059100 Sobic007G043500--Sobic002G159200 Sobic006G123900 Sobic006G123900 Sobic007G043500--Sobic006G123900 Sobic007G043500--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic007G043500--Sobic010G194700 Sobic007G043500--Sobic001G405300 Sobic008G073000 Sobic008G073000 Sobic007G043500--Sobic008G073000 Sobic006G080300 Sobic006G080300 Sobic007G043500--Sobic006G080300 Sobic008G106000 Sobic008G106000 Sobic007G043500--Sobic008G106000 Sobic004G031700 Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic002G067800--Sobic010G194700 Sobic008G165100 Sobic008G165100 Sobic002G067800--Sobic008G165100 Sobic002G067800--Sobic005G059100 Sobic002G095700 Sobic002G095700 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G067800--Sobic002G159200 Sobic002G067800--Sobic003G355000 Sobic002G067800--Sobic007G043500 Sobic002G067800--Sobic006G123900 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic002G153700 Sobic002G153700 Sobic003G307000--Sobic002G153700 Sobic003G307000--Sobic003G445400 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic001G306900 Sobic001G306900 Sobic003G307000--Sobic001G306900 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic010G065300 Sobic010G065300 Sobic003G307000--Sobic010G065300 Sobic005G059100--Sobic007G043500 Sobic005G059100--Sobic007G026000 Sobic005G059100--Sobic006G123900 Sobic005G059100--Sobic002G067800 Sobic005G059100--Sobic010G194700 Sobic005G059100--Sobic006G080300 Sobic007G185900 Sobic007G185900 Sobic005G059100--Sobic007G185900 Sobic005G059100--Sobic001G206100 Sobic005G059100--Sobic002G159200 Sobic001G405300--Sobic006G046700 Sobic001G405300--Sobic007G026000 Sobic001G405300--Sobic002G159200 Sobic006G161000 Sobic006G161000 Sobic001G405300--Sobic006G161000 Sobic001G405300--Sobic005G059100 Sobic001G405300--Sobic007G043500 Sobic006G013500 Sobic006G013500 Sobic001G405300--Sobic006G013500 Sobic006G186400 Sobic006G186400 Sobic001G405300--Sobic006G186400 Sobic001G405300--Sobic004G031700 Sobic008G153000 Sobic008G153000 Sobic006G046700--Sobic008G153000 Sobic006G046700--Sobic004G031700 Sobic006G046700--Sobic007G026000 Sobic006G046700--Sobic001G206100 Sobic006G046700--Sobic001G306900 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic006G046700--Sobic001G405300 Sobic006G046700--Sobic006G013500 Sobic009G198100 Sobic009G198100 Sobic003G355000--Sobic009G198100 Sobic002G034600 Sobic002G034600 Sobic003G355000--Sobic002G034600 Sobic002G045400 Sobic002G045400 Sobic003G355000--Sobic002G045400 Sobic003G433500 Sobic003G433500 Sobic003G355000--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic003G355000--Sobic008G174300 Sobic001G517500 Sobic001G517500 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic007G026000--Sobic008G153000 Sobic007G026000--Sobic006G046700 Sobic007G026000--Sobic005G059100 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic007G026000--Sobic002G153700 Sobic007G026000--Sobic001G206100 Sobic007G026000--Sobic006G013500 Sobic007G026000--Sobic004G031700
Octagon: transcription factors


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