Gene annotation
Transcriptome id Sobic.007G043500.2,Sobic.007G043500.1
Synonym TOP1ALPHA, TOP1, MGO1, Sb07g003610
Functional annotation DNA topoisomerase 1, putative, expressed
UniProt C5YGY1 , A0A1Z5R8J9
Pfam PF14370 PF02919 PF01028
Panther DB PTHR10290 PTHR10290:SF3
NCBI CDD -
KEGG Orthology K03163; DNA topoisomerase I
Gene Ontology GO:0006265; DNA topological change GO:0005694chromosome GO:0003917DNA topoisomerase type I (single strand cut, ATP-independent) activity GO:0003677DNA binding GO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity


Orthologs (automatic annotation)
TAIR AT5G55300 : DNA topoisomerase I alpha
RAP-DB (Rice) LOC_Os08g05840.1 : DNA topoisomerase 1, putative, expressed
MaizeGDB (Corn) Zm00025a030100
Brachypodium PNT62068 , PNT62067 , KQJ95390
Barley HORVU7Hr1G071710.9 , HORVU7Hr1G071710.8 , HORVU7Hr1G071710.5 , HORVU7Hr1G071710.4 , HORVU7Hr1G071710.7 , HORVU7Hr1G071710.6 , HORVU7Hr1G071710.1 , HORVU7Hr1G071710.3 , HORVU7Hr1G071710.2 , HORVU7Hr1G071710.18 , HORVU7Hr1G071710.11 , HORVU7Hr1G071710.10 , HORVU7Hr1G071710.13 , HORVU7Hr1G071710.12 , HORVU7Hr1G071710.15 , HORVU7Hr1G071710.14 , HORVU7Hr1G071710.17 , HORVU7Hr1G071710.16 , HORVU2Hr1G110750.4 , HORVU2Hr1G110750.2 , HORVU2Hr1G110750.3 , HORVU2Hr1G110750.1
Wheat TraesCS7B02G202300 , TraesCS2B02G523400 , TraesCS7A02G302200 , TraesCS7A02G302200 , TraesCS2B02G525600 , TraesCS2A02G497300 , TraesCS2A02G495200 , TraesCS7D02G297500 , TraesCS7D02G297500
Populus -


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cDNA sequences
Sobic.007G043500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G059100 bromodomain domain containing protein, expressed -
2 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
3 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
4 Sobic.002G067800 - -
5 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
6 Sobic.001G405300 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed -
7 Sobic.008G073000 expressed protein -
8 Sobic.006G080300 SET domain containing protein, expressed -
9 Sobic.008G106000 eukaryotic translation initiation factor 5B, putative, expressed K03243: translation initiation factor 5B
10 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
11 Sobic.001G206100 expressed protein -
12 Sobic.008G101800 expressed protein -
13 Sobic.004G031700 expressed protein -
14 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
16 Sobic.007G026000 ATBET9, putative, expressed -
17 Sobic.004G332300 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
19 Sobic.002G313300 bromodomain domain containing protein, expressed -
20 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14


Gene co-expression network
sample Sobic007G043500 Sobic007G043500 Sobic005G059100 Sobic005G059100 Sobic007G043500--Sobic005G059100 Sobic002G159200 Sobic002G159200 Sobic007G043500--Sobic002G159200 Sobic006G123900 Sobic006G123900 Sobic007G043500--Sobic006G123900 Sobic002G067800 Sobic002G067800 Sobic007G043500--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic007G043500--Sobic010G194700 Sobic001G405300 Sobic001G405300 Sobic007G043500--Sobic001G405300 Sobic008G073000 Sobic008G073000 Sobic007G043500--Sobic008G073000 Sobic006G080300 Sobic006G080300 Sobic007G043500--Sobic006G080300 Sobic008G106000 Sobic008G106000 Sobic007G043500--Sobic008G106000 Sobic005G059100--Sobic007G043500 Sobic007G026000 Sobic007G026000 Sobic005G059100--Sobic007G026000 Sobic005G059100--Sobic006G123900 Sobic005G059100--Sobic002G067800 Sobic005G059100--Sobic010G194700 Sobic005G059100--Sobic006G080300 Sobic007G185900 Sobic007G185900 Sobic005G059100--Sobic007G185900 Sobic001G206100 Sobic001G206100 Sobic005G059100--Sobic001G206100 Sobic005G059100--Sobic002G159200 Sobic002G159200--Sobic007G043500 Sobic009G000500 Sobic009G000500 Sobic002G159200--Sobic009G000500 Sobic002G159200--Sobic002G067800 Sobic003G307000 Sobic003G307000 Sobic002G159200--Sobic003G307000 Sobic002G159200--Sobic005G059100 Sobic002G159200--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic002G159200--Sobic006G046700 Sobic003G355000 Sobic003G355000 Sobic002G159200--Sobic003G355000 Sobic002G159200--Sobic007G026000 Sobic006G123900--Sobic008G106000 Sobic002G001600 Sobic002G001600 Sobic006G123900--Sobic002G001600 Sobic006G123900--Sobic005G059100 Sobic002G313300 Sobic002G313300 Sobic006G123900--Sobic002G313300 Sobic006G013500 Sobic006G013500 Sobic006G123900--Sobic006G013500 Sobic008G129700 Sobic008G129700 Sobic006G123900--Sobic008G129700 Sobic006G123900--Sobic006G080300 Sobic006G123900--Sobic007G185900 Sobic002G151600 Sobic002G151600 Sobic006G123900--Sobic002G151600 Sobic002G067800--Sobic010G194700 Sobic008G165100 Sobic008G165100 Sobic002G067800--Sobic008G165100 Sobic002G067800--Sobic005G059100 Sobic002G095700 Sobic002G095700 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G067800--Sobic002G159200 Sobic002G067800--Sobic003G355000 Sobic002G067800--Sobic007G043500 Sobic002G067800--Sobic006G123900 Sobic010G194700--Sobic002G067800 Sobic010G194700--Sobic001G206100 Sobic010G194700--Sobic008G165100 Sobic010G194700--Sobic002G151600 Sobic004G213000 Sobic004G213000 Sobic010G194700--Sobic004G213000 Sobic010G194700--Sobic005G059100 Sobic010G194700--Sobic006G013500 Sobic005G079800 Sobic005G079800 Sobic010G194700--Sobic005G079800 Sobic003G197800 Sobic003G197800 Sobic010G194700--Sobic003G197800 Sobic001G405300--Sobic006G046700 Sobic001G405300--Sobic007G026000 Sobic001G405300--Sobic002G159200 Sobic006G161000 Sobic006G161000 Sobic001G405300--Sobic006G161000 Sobic001G405300--Sobic005G059100 Sobic001G405300--Sobic007G043500 Sobic001G405300--Sobic006G013500 Sobic006G186400 Sobic006G186400 Sobic001G405300--Sobic006G186400 Sobic004G031700 Sobic004G031700 Sobic001G405300--Sobic004G031700 Sobic005G030300 Sobic005G030300 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic003G268300 Sobic003G268300 Sobic006G080300--Sobic003G268300 Sobic006G080300--Sobic004G031700 Sobic001G094000 Sobic001G094000 Sobic006G080300--Sobic001G094000 Sobic001G477800 Sobic001G477800 Sobic006G080300--Sobic001G477800 Sobic006G080300--Sobic002G313300 Sobic006G080300--Sobic001G206100 Sobic002G157000 Sobic002G157000 Sobic006G080300--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic006G080300--Sobic003G170100 Sobic001G257300 Sobic001G257300 Sobic006G080300--Sobic001G257300 Sobic001G543900 Sobic001G543900 Sobic008G106000--Sobic001G543900 Sobic008G106000--Sobic002G001600 Sobic008G106000--Sobic006G123900 Sobic008G106000--Sobic002G313300 Sobic008G106000--Sobic007G185900 Sobic002G330400 Sobic002G330400 Sobic008G106000--Sobic002G330400 Sobic006G009400 Sobic006G009400 Sobic008G106000--Sobic006G009400 Sobic008G116500 Sobic008G116500 Sobic008G106000--Sobic008G116500 Sobic002G077200 Sobic002G077200 Sobic008G106000--Sobic002G077200
Octagon: transcription factors


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